genome.fa.s3190.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01003190.1 Kokia drynarioides strain JFW-HI SEQ_115802, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  575368

Tables:   1   2   

This is table  2  of  2  ( 212 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
270041--270089	19	2.4	21	80	10	57	28	8	2	61	1.36
271960--271985	12	2.2	12	100	0	52	50	7	15	26	1.71
272916--272971	18	3.1	17	76	18	60	35	3	0	60	1.14
272907--272971	10	6.7	10	69	24	50	35	3	0	61	1.12
272907--272961	29	2.0	28	85	7	76	34	3	0	61	1.13
278131--278169	21	1.9	21	89	5	62	43	17	7	30	1.77
281550--281587	17	2.2	17	86	9	51	39	15	2	42	1.61
283750--283785	18	1.9	19	88	5	56	52	8	2	36	1.46
285967--286003	18	2.1	18	100	0	74	56	21	0	21	1.42
310240--310311	36	2.0	36	100	0	144	22	16	30	30	1.96
326252--326427	37	4.8	37	92	0	289	15	17	29	37	1.91
326279--326379	21	5.3	19	68	22	70	13	18	30	36	1.90
326257--326394	16	7.7	16	67	21	60	15	18	30	36	1.91
329645--329709	16	3.8	16	69	25	51	12	20	32	35	1.89
329642--329751	37	3.0	37	97	0	202	10	18	33	38	1.84
329661--329728	21	3.5	21	68	25	67	10	17	33	38	1.84
329642--329787	74	2.0	74	85	5	197	10	17	32	39	1.83
333421--333521	16	5.7	16	67	21	58	15	18	31	33	1.93
333437--333506	21	3.6	21	70	18	69	15	20	31	32	1.94
333416--333547	37	3.6	37	91	0	201	14	17	31	36	1.90
337188--337362	72	2.4	73	91	1	280	13	18	32	35	1.90
337188--337362	37	4.8	37	92	2	282	13	18	32	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
344232--344295	31	2.1	31	96	0	119	37	18	18	25	1.94
345985--346131	71	2.1	71	93	0	249	24	26	14	34	1.94
350341--350367	13	2.1	13	100	0	54	14	29	14	40	1.86
356936--357064	35	3.7	34	76	12	109	24	20	24	30	1.99
356797--357074	145	1.9	145	81	1	333	24	18	22	34	1.96
366111--366156	22	2.0	24	87	8	69	71	0	23	4	1.03
370363--370613	125	2.0	125	100	0	502	38	7	12	41	1.73
376260--376523	37	7.2	37	87	0	314	38	29	15	16	1.89
385338--385378	17	2.4	16	84	11	55	60	14	9	14	1.57
399887--399958	24	3.0	24	85	0	108	25	20	22	31	1.98
407977--408010	10	3.5	10	96	4	61	61	0	0	38	0.96
408888--408918	14	2.2	14	94	0	53	19	6	12	61	1.53
408949--409013	30	2.2	30	94	0	112	27	3	12	56	1.50
423639--423677	21	1.9	21	94	5	71	15	12	5	66	1.41
423731--423802	35	2.1	35	94	0	126	15	15	29	40	1.88
424938--424984	21	2.2	21	88	7	69	63	0	34	2	1.06
424938--424973	12	3.2	12	85	14	51	66	0	33	0	0.92
425273--425319	24	2.0	24	86	0	67	63	8	25	2	1.34
431109--431170	31	2.0	31	100	0	124	19	16	12	51	1.76
432165--432189	13	1.9	13	100	0	50	28	16	8	48	1.74
432305--432363	26	2.3	26	84	0	73	37	16	13	32	1.88
434807--434850	22	2.0	22	86	4	63	36	15	20	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
439780--439838	6	8.6	7	82	17	63	0	25	0	74	0.82
439780--439829	15	3.5	15	78	15	61	0	28	0	72	0.86
442583--442626	23	2.0	22	86	4	61	38	0	15	45	1.47
444009--444041	16	2.0	17	88	5	50	48	6	0	45	1.27
454110--454156	17	2.7	18	75	24	55	46	17	19	17	1.84
458868--458914	24	2.0	24	87	8	69	48	10	14	25	1.76
467022--467068	24	2.0	24	87	8	69	48	10	14	25	1.76
472902--472952	6	8.8	6	75	16	54	0	21	0	78	0.75
472912--472941	8	3.8	8	100	0	60	0	23	0	76	0.78
472906--472966	27	2.2	29	82	5	72	6	19	0	73	1.04
484336--484509	75	2.3	75	81	3	197	26	9	13	50	1.72
485455--485511	24	2.4	24	80	11	71	54	7	14	24	1.64
485492--485543	25	2.1	24	89	3	77	69	3	9	17	1.31
487913--488262	32	10.8	32	83	4	362	37	16	16	29	1.91
487913--488262	132	2.7	128	81	5	364	37	16	16	29	1.91
510425--510622	50	3.9	51	88	2	267	33	14	14	37	1.86
510411--510644	50	4.6	50	81	7	258	34	14	13	37	1.86
512176--512235	30	2.0	30	100	0	120	36	20	16	26	1.93
514400--514623	52	4.4	52	89	2	337	32	15	13	38	1.87
514389--514623	103	2.3	103	88	2	348	33	14	13	38	1.85
518664--518803	75	1.9	75	86	0	199	30	13	9	47	1.74
520218--520315	42	2.3	44	80	7	121	13	20	16	50	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
525415--525454	20	2.0	20	85	5	53	60	15	12	12	1.60
528367--528434	34	2.0	34	97	0	127	35	22	17	25	1.95
537832--537907	37	2.1	37	100	0	152	34	14	13	38	1.85
540740--541056	29	11.1	28	78	9	223	35	3	26	35	1.73
540746--541056	58	5.4	58	79	7	289	35	3	26	35	1.73
543265--544382	39	28.7	39	71	11	630	25	20	31	23	1.98
543257--544148	78	11.5	77	80	4	846	25	19	31	23	1.98
544044--544421	78	4.8	78	84	1	443	24	20	31	23	1.98
544004--544437	78	5.6	77	73	11	310	24	20	31	23	1.98
555880--555921	14	3.0	14	83	10	59	69	4	7	19	1.31
556076--556406	57	5.7	57	83	3	344	35	3	25	35	1.73
556076--556389	28	10.9	28	79	8	319	35	3	27	34	1.74
556076--556406	29	11.5	29	80	3	330	35	3	25	35	1.73
558832--558876	22	1.9	22	86	13	63	57	8	8	24	1.57
558883--558916	2	17.0	2	93	0	59	52	0	0	47	1.00
563062--563105	9	4.7	9	80	8	52	22	6	15	54	1.65
563062--563105	19	2.3	19	92	0	70	22	6	15	54	1.65
563651--563821	57	3.1	55	81	10	188	33	0	5	59	1.26
564054--564150	30	3.3	27	74	18	81	57	11	5	25	1.54
568142--568166	1	25.0	1	100	0	50	0	0	0	100	0.00
568475--568518	21	2.1	21	86	0	61	54	0	2	43	1.12
570071--570113	21	2.0	21	100	0	86	44	18	4	32	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
570768--570814	20	2.3	20	96	0	85	29	10	19	40	1.85
571326--571371	24	1.9	23	86	8	65	56	6	4	32	1.45
572403--572460	19	2.9	20	79	5	55	12	15	1	70	1.24
574858--574902	3	15.0	3	100	0	90	66	0	0	33	0.92

Tables:   1   2

The End!