genome.fa.s3955.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01003955.1 Kokia drynarioides strain JFW-HI SEQ_117043, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  116991

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1122--1678	30	18.9	29	76	7	451	35	31	2	31	1.71
1111--1648	59	9.1	59	85	2	659	35	31	2	30	1.70
1972--2146	96	1.8	96	85	4	246	29	18	12	38	1.88
3390--3438	25	2.0	25	88	8	73	67	0	0	32	0.91
9057--9092	18	2.0	18	88	0	54	30	19	19	30	1.96
16215--16267	21	2.5	21	90	0	79	30	24	9	35	1.87
18269--18303	18	1.9	18	94	0	61	65	14	5	14	1.44
26317--26474	81	2.0	81	92	2	264	27	18	12	41	1.87
27757--27783	5	5.4	5	100	0	54	0	40	0	59	0.98
29430--29493	34	1.9	33	81	9	76	39	4	3	53	1.38
29500--29531	15	2.1	16	88	11	50	37	0	6	56	1.25
32839--32871	11	3.0	11	90	0	57	33	3	0	63	1.10
37439--37472	16	2.2	16	89	5	52	82	5	11	0	0.83
43514--43573	31	1.9	31	83	6	77	31	20	45	3	1.67
44827--44877	25	2.0	26	88	3	77	45	7	3	43	1.51
47978--48038	3	21.3	3	86	9	92	67	0	1	31	1.01
51833--51965	71	1.9	71	91	0	221	32	8	21	37	1.83
55836--55896	8	7.2	8	74	17	52	47	0	0	52	1.00
61894--61925	7	4.6	7	100	0	64	28	46	0	25	1.53
65601--65633	6	5.5	6	92	0	57	78	0	0	21	0.75
67543--67583	15	2.6	16	81	14	50	29	0	0	70	0.87
77621--77753	21	6.5	21	84	6	98	48	27	4	19	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77634--77704	19	3.6	20	88	11	103	42	30	8	18	1.80
77621--77760	7	20.6	7	74	5	63	48	27	4	19	1.67
77633--77731	20	4.9	21	85	7	98	46	29	6	18	1.72
77674--77787	21	5.5	21	81	2	106	51	25	2	20	1.60
77674--77766	7	13.4	7	78	2	80	52	25	2	19	1.57
77692--77835	27	5.3	27	80	8	123	50	23	2	22	1.62
77736--78014	7	41.4	7	67	11	75	45	22	5	26	1.75
77811--77860	20	2.5	20	93	0	82	48	18	8	26	1.75
77892--78035	27	5.4	27	77	8	127	44	25	5	25	1.75
77936--78010	34	2.2	34	90	0	114	42	25	4	28	1.73
77978--78030	20	2.7	20	87	0	70	45	22	5	26	1.74
77998--78094	27	3.6	27	76	2	88	44	19	5	30	1.73
78098--78143	20	2.3	20	84	0	56	39	23	10	26	1.88
78321--78382	20	3.1	19	79	11	70	48	29	0	22	1.51
78396--78446	20	2.5	20	87	6	68	49	13	7	29	1.70
78396--78481	27	3.2	26	71	12	75	47	18	5	27	1.71
78416--78485	34	2.1	34	86	0	95	47	22	4	25	1.70
78464--78521	20	2.9	20	81	0	80	41	25	8	24	1.83
82269--82351	40	2.1	40	100	0	166	42	9	16	31	1.81
87158--87255	50	2.0	48	96	4	178	42	26	2	28	1.66
91093--91171	29	2.7	27	78	9	68	31	7	26	34	1.85
91248--91356	31	3.6	32	77	14	104	32	4	23	39	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96738--96780	18	2.5	17	76	3	50	34	0	2	62	1.08
96876--96919	22	2.0	22	86	8	63	70	0	0	29	0.88
103113--103240	62	2.1	62	82	2	150	35	6	15	42	1.72
103848--103903	28	2.0	29	82	10	71	57	1	0	41	1.09
105436--105507	27	2.6	28	78	8	76	36	9	26	27	1.88
105530--105890	29	12.5	28	71	16	197	36	2	24	36	1.70
105487--105680	58	3.3	58	81	12	197	37	1	26	35	1.64
105587--105709	57	2.1	57	92	1	201	34	0	25	39	1.62
105580--105883	86	3.5	87	77	11	295	36	2	23	36	1.70
105574--105895	29	11.1	29	74	10	221	36	3	24	35	1.72
106738--106789	3	16.3	3	79	18	52	32	0	1	65	1.04
106738--106813	19	3.7	20	76	15	66	34	1	2	61	1.18
106735--106790	29	2.0	29	86	10	53	33	0	1	64	1.04
107515--107572	18	3.4	16	81	11	62	53	3	0	43	1.17
108056--109073	193	5.3	193	90	1	1551	23	22	18	35	1.95
108056--109073	387	2.6	386	91	1	1621	23	22	18	35	1.95

Tables:   1

The End!