genome.fa.s4983.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01004983.1 Kokia drynarioides strain JFW-HI SEQ_118728, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  365800

Tables:   1   2   

This is table  2  of  2  ( 153 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
287208--287290	41	2.0	41	100	0	166	30	24	24	21	1.99
287650--287816	85	2.0	86	87	1	246	37	16	22	23	1.93
287569--288345	208	3.7	208	89	1	1092	40	17	19	22	1.91
287858--288024	85	2.0	85	86	0	235	38	16	20	23	1.93
287943--288034	48	1.9	48	81	0	112	40	14	20	25	1.90
288272--288413	48	3.0	48	82	0	167	39	15	21	23	1.91
288150--288867	171	4.2	171	92	1	1050	40	16	19	23	1.90
288443--288582	48	2.9	48	86	2	183	40	16	20	22	1.91
288614--288751	48	2.9	48	85	2	179	41	15	19	23	1.90
288786--288952	85	2.0	85	83	2	210	37	12	21	28	1.90
288661--289106	208	2.1	208	88	2	664	39	16	19	24	1.92
289043--289150	37	2.9	37	90	0	162	38	18	18	24	1.93
288835--289349	245	2.1	245	86	2	732	38	17	20	23	1.93
289324--289416	48	1.9	48	88	0	141	39	15	21	23	1.91
289080--289526	208	2.1	208	87	3	632	39	17	20	22	1.92
288664--289519	453	1.9	453	87	2	1263	39	17	19	23	1.92
291485--291714	30	7.8	29	78	9	198	34	20	3	41	1.68
291460--291702	60	4.1	59	82	5	267	34	20	3	40	1.69
291460--291701	119	2.0	119	85	7	332	34	21	3	40	1.69
291488--291737	29	8.4	29	76	7	218	35	20	2	40	1.67
292913--292976	31	2.1	31	87	0	92	45	10	15	28	1.80
304856--304986	61	2.1	62	80	9	153	43	11	3	41	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
305617--305651	3	11.7	3	100	0	70	68	0	0	31	0.90
307294--307380	30	2.9	30	83	5	106	32	18	6	42	1.77
319384--319746	49	7.4	48	72	10	209	37	15	27	19	1.92
319380--319741	196	1.8	196	84	3	496	37	15	28	19	1.92
319409--319746	98	3.4	98	85	1	428	37	15	26	19	1.93
321659--321764	29	3.6	28	81	6	113	32	20	5	41	1.76
323815--323886	38	1.9	37	91	2	117	48	5	0	45	1.25
346300--346345	24	1.9	24	95	0	83	34	8	10	45	1.70
347591--347624	16	2.1	17	88	5	52	44	2	11	41	1.56
356492--356703	37	5.7	37	89	0	280	11	20	29	37	1.89
365711--365778	17	4.1	16	86	5	82	45	0	4	50	1.22

Tables:   1   2

The End!