genome.fa.s5566.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01005566.1 Kokia drynarioides strain JFW-HI SEQ_119676, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88749

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4158--4191	17	1.9	18	94	5	61	64	0	5	29	1.17
4143--4198	28	2.0	27	90	10	87	64	0	7	28	1.20
4146--4205	11	5.9	11	72	21	51	63	1	8	26	1.32
13856--13898	18	2.4	18	100	0	86	32	9	41	16	1.80
14553--14604	21	2.5	20	78	12	52	36	25	13	25	1.92
18406--18498	36	2.6	36	80	0	105	15	25	15	44	1.85
20028--20059	14	2.1	16	88	11	50	53	28	6	12	1.62
20556--20592	20	1.9	19	89	10	58	37	2	0	59	1.12
21304--21353	26	2.0	25	88	11	75	72	0	26	2	0.96
21892--22102	29	7.2	30	78	7	152	33	25	3	37	1.73
21914--22121	29	7.1	30	79	9	173	36	26	2	34	1.70
24391--24433	3	14.3	3	100	0	86	67	0	0	32	0.91
24736--24794	24	2.5	24	86	5	75	64	3	8	23	1.37
37898--37998	52	1.9	52	100	0	202	16	7	29	45	1.76
42790--42894	36	2.9	36	84	1	129	37	14	26	21	1.92
43387--43638	116	2.2	116	89	1	389	26	9	28	35	1.88
43682--43726	21	2.1	21	83	0	54	22	13	24	40	1.90
57162--57186	3	8.3	3	100	0	50	68	0	32	0	0.90
57329--57354	12	2.2	12	100	0	52	34	0	23	42	1.54
57998--58037	21	1.9	21	89	0	62	30	22	20	27	1.98
59801--59846	20	2.3	20	92	0	74	69	0	2	28	1.00
59863--59904	21	2.1	20	86	8	59	42	0	2	54	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64547--64599	22	2.3	22	83	6	61	39	0	3	56	1.17
65137--65173	16	2.3	17	86	9	51	48	8	5	37	1.56
68832--69031	71	2.8	71	82	1	249	34	24	17	24	1.96
73143--73185	18	2.5	17	76	3	50	34	0	2	62	1.08
73200--73252	17	3.1	17	77	2	52	54	5	1	37	1.35
76412--76450	11	3.5	11	100	0	78	15	7	17	58	1.59
77035--77172	29	4.8	29	76	14	90	39	7	24	28	1.83
77186--77272	30	2.9	30	88	6	131	36	2	22	37	1.67
77186--77276	31	3.0	30	88	7	130	36	2	21	39	1.66
77193--77391	30	6.7	30	75	12	124	40	2	18	39	1.64
77274--77386	59	1.9	60	83	1	147	40	2	15	40	1.62
78427--78459	11	3.1	11	82	8	50	39	0	0	60	0.97
79094--79143	17	2.9	17	75	0	55	56	10	4	30	1.51
79084--79157	34	2.2	33	86	6	105	54	6	2	36	1.41
79559--80145	210	2.8	208	87	2	800	22	22	19	35	1.96
79959--80302	160	2.2	160	90	1	546	23	20	18	38	1.94
79759--80511	369	2.0	370	91	2	1219	22	20	18	37	1.94
80119--80768	209	3.1	208	93	0	1093	23	21	17	37	1.94
80574--80939	172	2.1	171	91	1	590	23	21	16	38	1.93
80365--81148	380	2.1	381	91	1	1259	22	22	17	37	1.94
79559--81316	798	2.2	785	84	4	2194	22	21	18	36	1.95
80753--81313	209	2.7	208	90	0	863	24	21	17	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79586--81329	589	3.0	587	89	2	2594	22	21	18	37	1.94
81702--81997	50	6.0	51	74	9	204	16	31	17	35	1.92
81703--82000	99	3.0	98	78	4	303	16	30	17	35	1.92
82955--83040	5	16.8	5	71	17	61	1	20	0	77	0.83
82969--83019	21	2.5	20	87	12	77	1	19	0	78	0.85
82956--83040	33	2.5	33	79	11	84	1	20	0	78	0.81
82956--83036	22	3.7	21	78	18	85	1	19	0	79	0.81
83938--83989	10	4.9	10	79	11	59	1	9	3	84	0.82
83950--83988	17	2.2	18	90	4	62	0	10	2	87	0.65
87695--87788	29	3.2	29	80	8	102	29	10	26	32	1.90
87773--88041	30	9.1	29	75	14	178	39	2	20	37	1.65
87772--88050	59	4.7	59	76	9	239	38	2	20	38	1.67

Tables:   1

The End!