genome.fa.s5601.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01005601.1 Kokia drynarioides strain JFW-HI SEQ_119735, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51053

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
582--647	4	16.2	4	80	9	71	0	33	0	66	0.92
595--647	25	2.1	25	85	0	70	0	32	0	67	0.91
582--643	17	3.5	17	82	12	81	0	33	0	66	0.92
5624--5773	30	5.1	30	69	16	116	38	3	24	34	1.72
5596--5743	28	5.2	28	67	18	90	35	2	27	34	1.71
5553--5808	58	4.4	58	80	8	243	38	3	24	33	1.72
5782--5951	30	5.7	30	77	8	159	38	1	22	37	1.65
6686--6803	40	3.0	40	100	0	236	28	17	5	48	1.69
7756--7848	17	5.4	17	84	2	123	54	2	0	43	1.12
7756--7837	6	14.2	6	74	12	73	53	1	0	45	1.08
7788--7837	23	2.2	23	85	7	66	54	2	0	44	1.11
8297--9025	49	14.9	48	73	6	457	15	25	20	38	1.92
8297--9025	98	7.4	98	76	7	509	15	25	20	38	1.92
8297--9025	147	5.0	145	80	5	551	15	25	20	38	1.92
8675--9018	148	2.3	148	91	0	553	15	25	20	38	1.92
19202--19556	58	6.1	56	80	9	342	39	1	25	32	1.67
19258--19513	29	8.9	29	72	14	174	37	2	27	32	1.70
19234--19661	30	14.7	28	73	12	203	38	2	25	33	1.69
19475--19685	30	7.1	30	85	6	229	36	2	23	36	1.70
21492--21550	17	3.4	18	83	4	68	54	1	0	44	1.10
21492--21550	6	10.2	6	73	14	52	54	1	0	44	1.10
23762--23789	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23901--23945	14	3.0	16	78	15	51	68	2	0	28	1.01
23905--23945	15	2.8	15	82	14	50	68	2	0	29	1.03
25501--25569	29	2.4	29	92	4	113	34	0	42	23	1.54
25811--25855	24	1.9	24	90	4	74	37	17	11	33	1.85
26975--27039	31	2.1	31	91	5	105	41	7	7	43	1.62
33521--33573	22	2.5	20	77	17	52	39	9	5	45	1.60
40608--40674	27	2.4	28	82	9	75	61	1	4	32	1.25
48507--48538	6	5.3	6	92	0	55	53	12	15	18	1.73
50847--51038	96	2.0	95	82	8	228	36	13	20	30	1.90

Tables:   1

The End!