genome.fa.s5845.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01005845.1 Kokia drynarioides strain JFW-HI SEQ_120143, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41631

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105--162	24	2.4	24	82	0	62	8	5	48	37	1.56
260--667	6	67.5	6	74	4	183	25	28	10	36	1.89
281--351	21	3.5	21	79	14	60	26	29	8	35	1.86
255--666	12	35.1	12	74	6	238	25	28	10	36	1.89
1287--1456	84	2.0	84	100	0	340	46	10	17	25	1.79
3185--3228	19	2.2	19	84	12	52	54	13	11	20	1.69
12378--12623	21	11.9	21	70	9	83	22	28	11	37	1.89
12378--12618	30	7.7	30	72	13	157	23	27	10	38	1.88
12378--12618	12	19.8	12	71	4	124	23	27	10	38	1.88
12435--12621	6	31.7	6	70	5	85	22	28	11	37	1.89
12567--12623	9	6.3	9	75	0	51	17	31	14	36	1.89
12675--12747	27	2.9	24	84	8	83	39	47	2	9	1.50
12702--12748	12	3.9	12	78	10	51	40	51	0	8	1.33
16160--16203	19	2.3	19	84	0	61	68	6	2	22	1.25
19334--19379	9	5.4	9	75	15	53	0	13	0	86	0.56
19338--19380	14	2.9	14	89	6	59	0	16	0	83	0.64
22384--22464	18	4.4	19	70	20	64	70	0	3	25	1.04
22917--22973	23	2.5	23	97	0	105	22	24	26	26	2.00
24143--24267	42	3.0	42	96	1	225	25	19	27	28	1.99
27578--27674	27	3.7	26	80	5	90	63	11	15	9	1.50
27602--27748	32	4.5	33	73	6	120	63	14	13	8	1.51
27667--27821	27	5.8	27	73	8	104	62	18	12	6	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27626--27858	74	3.1	73	81	13	201	63	16	13	6	1.50
27736--27826	32	2.9	32	85	8	141	63	18	13	4	1.45
27694--27858	79	2.1	79	87	2	233	63	17	13	5	1.49
27731--27854	37	3.2	35	70	23	97	62	18	14	4	1.46
27699--27858	42	4.0	42	75	19	151	62	18	13	5	1.50
27736--27875	64	2.2	64	82	6	160	61	17	14	6	1.53
27726--27858	27	5.1	27	75	18	129	62	18	15	3	1.47
27578--27841	5	50.4	5	69	14	97	62	15	14	7	1.53
28944--28995	15	3.5	15	76	10	61	15	11	9	63	1.52
28991--29049	25	2.4	25	77	5	66	10	13	10	66	1.46
28976--29021	20	2.3	20	80	0	56	13	13	10	63	1.53
29037--29085	25	2.0	24	88	4	71	12	14	12	61	1.58
29046--29103	25	2.3	24	80	8	62	15	10	12	62	1.55
29087--29150	21	3.1	21	86	4	87	14	14	9	62	1.54
29203--29292	36	2.5	36	84	12	105	16	13	10	60	1.59
29008--29257	29	8.9	29	71	17	154	13	14	10	61	1.57
29270--29316	25	1.9	24	91	4	76	12	10	10	65	1.46
29445--29506	27	2.2	29	83	13	78	29	0	6	64	1.18
29465--29510	14	3.4	14	81	3	58	23	0	6	69	1.11
31800--31886	10	8.7	10	79	9	54	13	13	10	62	1.55
31824--32805	5	197.6	5	66	18	130	13	14	11	60	1.59
31798--32844	30	34.6	30	69	20	376	14	13	11	60	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31785--31871	25	3.5	25	83	9	97	13	14	10	60	1.58
31830--32966	20	58.0	20	66	20	219	14	13	11	60	1.59
32212--32443	45	5.2	45	74	11	190	14	15	11	59	1.62
32828--32952	30	4.2	30	79	13	136	18	13	8	60	1.57
32930--33003	26	3.2	23	81	18	84	13	12	10	63	1.52
34841--34902	27	2.3	27	91	0	97	67	9	8	14	1.40
34848--34892	17	2.8	16	87	9	65	68	11	8	11	1.39
34956--35078	5	24.0	5	72	11	79	62	17	17	2	1.43
34958--35071	15	7.7	15	76	7	90	63	17	16	2	1.43
34950--35057	47	2.3	47	84	7	132	64	14	16	3	1.42
34950--35095	22	6.7	22	75	13	115	63	15	17	4	1.47
36168--36196	15	1.9	15	100	0	58	20	13	0	65	1.26
36162--36211	25	2.0	25	88	0	73	20	12	4	64	1.43
36345--36401	24	2.3	25	82	11	64	29	0	5	64	1.15
37748--37789	16	2.6	16	96	0	75	33	16	0	50	1.46
38703--38751	25	2.0	25	95	0	89	12	16	10	61	1.57
39318--39366	25	2.0	25	91	0	80	12	14	14	59	1.62
39323--39380	25	2.3	25	87	0	80	15	12	12	60	1.59
38243--39368	608	1.9	604	91	1	1813	31	17	12	37	1.88
41390--41554	23	7.4	23	75	14	114	43	20	23	13	1.87

Tables:   1

The End!