genome.fa.s5910.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01005910.1 Kokia drynarioides strain JFW-HI SEQ_120268, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  9298

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
550--590	20	2.0	21	85	4	57	34	7	14	43	1.73
2442--2565	62	2.0	62	90	0	194	27	18	15	38	1.91
2221--2843	278	2.2	279	85	2	824	28	17	14	38	1.89
2720--2906	62	3.0	62	84	0	230	27	17	16	39	1.90
2442--3108	340	2.0	340	84	1	888	26	17	15	40	1.90
2841--3770	215	4.3	216	80	3	1021	28	17	14	40	1.89
2841--3770	434	2.2	430	83	4	1129	28	17	14	40	1.89
3706--3832	62	2.0	62	86	3	175	26	19	15	37	1.92
3768--4264	216	2.3	216	83	3	617	29	18	12	39	1.88
3272--4543	494	2.6	492	86	2	1798	28	17	14	39	1.89
4203--4326	62	2.0	62	91	0	203	25	20	17	35	1.95
4479--4605	62	2.0	62	89	0	191	27	18	15	37	1.92
4541--5029	216	2.3	216	84	3	626	28	17	13	40	1.88
3489--5099	773	2.1	771	91	1	2618	28	18	13	39	1.88
4976--5153	62	2.9	62	86	1	241	26	17	16	39	1.91
5313--5502	62	3.0	61	83	5	195	26	16	15	41	1.88
4757--5704	340	2.8	338	83	4	1192	27	17	14	40	1.89
5097--6273	556	2.1	556	86	2	1630	27	17	14	40	1.89
5437--5933	215	2.3	216	83	4	592	28	17	14	39	1.88
4479--6336	896	2.1	896	89	1	2861	27	17	14	40	1.88
5872--6057	62	3.0	62	91	0	300	26	18	16	39	1.91
5653--6336	340	2.0	341	87	0	994	27	17	15	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6209--6336	63	2.0	62	83	4	159	28	15	14	41	1.86
5931--6531	279	2.2	278	88	1	882	26	16	15	42	1.87
4210--6767	896	3.0	826	79	11	2658	27	17	14	40	1.89
6271--7149	217	4.1	215	82	4	948	28	16	14	41	1.87
7284--9295	216	9.4	216	80	4	2061	40	14	17	27	1.88
7296--9295	430	4.7	426	80	4	2071	40	14	17	28	1.88

Tables:   1

The End!