genome.fa.s6143.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01006143.1 Kokia drynarioides strain JFW-HI SEQ_120677, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63688

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4768--4819	27	1.9	27	92	0	86	30	13	19	36	1.90
7556--7598	16	2.6	17	78	7	54	30	0	0	69	0.88
11411--11545	34	4.0	34	77	3	137	16	12	33	37	1.86
11408--11561	68	2.3	68	88	2	220	18	11	32	38	1.86
16616--16671	28	2.0	28	100	0	112	42	17	7	32	1.77
19825--19974	34	4.4	34	77	0	156	18	12	34	35	1.88
19825--19974	68	2.2	68	92	0	246	18	12	34	35	1.88
29706--29879	88	2.0	88	88	0	258	35	16	22	25	1.95
30781--31038	99	2.6	99	85	1	313	31	15	30	21	1.95
30997--31171	53	3.4	53	93	2	284	34	17	34	13	1.89
30893--31330	50	8.7	50	77	4	362	34	17	31	16	1.92
30862--31330	99	4.7	99	77	6	370	34	17	30	17	1.93
33690--33725	15	2.4	15	100	0	72	25	8	5	61	1.46
35117--35162	21	2.2	21	84	7	58	19	19	45	15	1.85
36504--36545	22	1.9	22	90	0	66	30	0	19	50	1.48
42326--42408	43	1.9	43	97	0	157	26	26	20	26	1.99
42342--42481	72	2.0	68	86	5	190	20	27	19	29	1.96
42414--42624	43	4.9	43	88	0	287	26	27	19	26	1.99
45057--45102	22	2.0	23	91	4	76	45	15	17	21	1.85
45753--45794	19	2.3	18	83	4	57	30	0	4	64	1.14
45733--45812	26	3.0	26	72	1	88	32	0	7	60	1.25
45733--45814	27	3.1	27	71	3	94	32	0	7	59	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45915--46083	41	4.1	41	89	1	223	18	31	20	29	1.96
46064--46105	22	1.9	22	95	0	75	23	28	21	26	1.99
46027--46146	63	1.9	63	91	0	195	20	31	19	29	1.96
46086--46273	41	4.6	41	88	3	254	18	32	19	29	1.96
45986--46185	104	1.9	104	90	0	319	18	32	20	29	1.96
45941--46223	145	2.0	145	86	0	395	19	31	20	28	1.97
45915--46267	186	1.9	186	85	2	485	18	32	20	29	1.96
46253--46363	40	2.8	40	84	0	150	18	21	17	42	1.89
47529--47583	25	2.2	26	78	15	62	67	7	0	25	1.16
47515--47567	17	3.1	17	73	13	54	67	7	0	24	1.16
47680--48006	163	2.0	163	97	0	618	31	17	19	31	1.95
48661--48883	111	2.0	111	99	0	437	27	13	8	49	1.72
55113--55162	23	2.2	22	82	3	55	66	8	0	26	1.19
55142--55183	15	2.6	17	85	7	52	64	2	0	33	1.07
55570--55603	17	2.0	17	88	0	50	35	5	26	32	1.81

Tables:   1

The End!