genome.fa.s6599.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01006599.1 Kokia drynarioides strain JFW-HI SEQ_121188, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59363

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5329--5571	109	2.2	109	87	0	351	23	20	20	34	1.97
6663--6696	12	2.8	12	100	0	68	23	35	26	14	1.94
8047--8089	18	2.4	18	80	7	52	51	0	2	46	1.13
8885--8936	23	2.3	23	80	3	70	44	3	1	50	1.31
10386--10414	14	2.1	14	100	0	58	37	0	13	48	1.43
10913--10973	32	1.9	32	89	0	95	31	11	6	50	1.64
11355--11462	51	2.2	51	83	9	136	34	2	7	55	1.42
11384--11508	51	2.5	48	80	7	135	36	3	6	53	1.43
12014--12486	221	2.2	220	86	4	645	39	10	12	36	1.79
12729--12808	41	2.0	41	87	0	115	63	11	3	21	1.42
13462--13507	24	2.0	23	86	4	65	65	0	2	32	1.05
13785--14864	214	5.0	209	77	11	837	40	9	12	37	1.76
13718--14864	426	2.6	427	80	9	1220	41	9	12	36	1.76
22897--22946	27	1.9	27	84	8	68	56	20	0	24	1.43
25596--25665	35	2.0	34	83	8	88	14	12	4	68	1.35
29709--30154	215	2.1	216	81	2	529	38	13	19	29	1.89
30152--35513	215	25.1	215	80	5	5064	40	13	17	28	1.88
31105--31461	197	1.8	194	82	3	455	38	13	17	29	1.88
31299--35513	214	19.7	214	79	6	3864	40	13	17	28	1.88
31299--35513	431	9.9	430	81	5	4356	40	13	17	28	1.88
36638--36775	50	2.7	52	81	7	142	37	11	13	36	1.82
36972--37002	11	2.8	11	95	0	53	74	6	0	19	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38392--38436	18	2.4	18	85	10	56	13	20	4	62	1.48
39448--39496	26	2.0	24	88	11	73	16	10	0	73	1.09
39476--39550	29	2.6	28	76	21	75	14	14	2	68	1.33
40736--40891	50	3.1	50	78	10	145	37	11	14	36	1.83
40895--40959	33	2.0	33	87	6	96	44	7	13	33	1.73
41055--41087	17	1.9	17	88	11	50	66	6	0	27	1.15
41223--43548	214	10.8	214	81	5	2357	40	13	17	28	1.88
41223--43548	430	5.4	430	82	5	2523	40	13	17	28	1.88
41223--43535	857	2.7	855	82	4	2687	40	13	17	28	1.88
44377--44416	20	2.0	20	90	9	64	17	22	20	40	1.92
46858--46898	3	14.3	3	90	10	68	31	0	0	68	0.90
47174--51719	216	21.2	217	79	5	4272	39	14	17	28	1.89
47174--51719	429	10.6	430	80	4	4609	39	14	17	28	1.89
53130--53260	50	2.6	50	82	6	147	37	10	16	35	1.83
53462--53494	17	1.9	17	88	11	50	66	6	0	27	1.15
53656--54345	216	3.2	215	80	5	793	40	13	17	28	1.87
54244--54472	127	1.8	127	80	7	277	37	12	22	27	1.90
54362--55895	215	7.2	213	78	7	1395	41	12	17	28	1.86
54362--55895	214	7.2	208	76	8	1019	41	12	17	28	1.86
57427--58790	216	6.3	216	77	6	1232	41	13	17	28	1.87
57427--58794	430	3.2	428	80	5	1480	41	13	17	27	1.87
58815--59360	216	2.5	216	87	2	747	39	14	19	26	1.90

Tables:   1

The End!