genome.fa.s6876.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01006876.1 Kokia drynarioides strain JFW-HI SEQ_121477, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27300

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108--2238	216	10.0	215	79	4	2095	40	13	17	27	1.88
108--2238	430	5.0	430	80	5	2139	40	13	17	27	1.88
1127--1507	195	1.9	196	86	2	534	41	13	17	27	1.86
1325--2235	214	4.2	216	79	4	903	40	13	18	27	1.88
488--2163	842	2.0	840	81	3	1971	40	13	18	27	1.88
3530--3575	24	1.9	24	90	0	74	26	15	6	52	1.67
4082--5273	216	5.6	215	80	6	1298	40	14	16	27	1.88
4084--15818	410	27.7	410	78	10	7524	40	14	17	27	1.88
5095--5853	194	3.8	194	71	11	488	40	13	18	27	1.88
5266--15805	216	49.6	216	73	11	3376	40	13	17	27	1.88
7393--7782	194	2.0	194	82	4	464	41	13	17	27	1.88
7584--10551	215	13.9	215	76	8	2457	40	14	17	27	1.89
8855--10551	214	7.9	214	80	5	1829	39	14	17	27	1.89
5676--24960	432	44.9	429	78	8	14051	40	13	17	27	1.88
16246--24960	216	40.7	216	78	5	7405	40	13	17	27	1.88
18387--18782	194	2.0	194	81	5	453	39	13	18	28	1.88
25106--27236	216	10.0	215	79	4	2095	40	13	17	27	1.88
25106--27236	430	5.0	430	80	5	2139	40	13	17	27	1.88
26125--26505	195	1.9	196	86	2	534	41	13	17	27	1.86
26323--27233	214	4.2	216	79	4	903	40	13	18	27	1.88
25486--27161	842	2.0	840	81	3	1971	40	13	18	27	1.88

Tables:   1

The End!