genome.fa.s7460.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01007460.1 Kokia drynarioides strain JFW-HI SEQ_122081, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  612245

Tables:   1   2   

This is table  1  of  2  ( 222 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6589--6649	32	1.9	32	83	6	79	16	9	4	68	1.34
7114--7177	4	15.2	4	74	9	56	25	3	4	67	1.25
7120--7177	26	2.3	25	87	3	80	25	3	5	65	1.29
10278--10326	16	3.0	17	85	8	66	81	0	10	8	0.87
10295--10339	7	6.3	7	80	14	56	84	0	11	4	0.76
11303--11541	50	4.8	50	76	11	245	35	21	16	25	1.94
11198--11950	102	7.5	102	75	7	533	35	19	16	27	1.94
11416--11898	197	2.4	198	79	5	458	35	20	15	28	1.93
13687--13777	4	23.8	4	72	20	70	19	3	3	73	1.11
13727--13779	7	7.3	7	76	16	54	16	1	1	79	0.92
13686--13779	44	2.1	44	86	5	127	19	3	3	74	1.09
13715--13796	37	2.2	37	80	10	96	19	2	3	74	1.08
13687--13777	15	5.9	15	73	17	80	19	3	3	73	1.11
13691--13829	26	5.3	26	73	15	81	20	3	2	72	1.13
13969--13998	12	2.5	12	94	0	51	30	0	13	56	1.37
13990--14023	17	2.1	16	88	5	50	29	0	0	70	0.87
15972--16025	25	2.2	25	86	3	74	42	14	31	11	1.81
16030--16119	22	4.0	22	92	1	153	41	26	21	11	1.86
17909--17986	25	3.2	24	64	14	61	29	17	8	43	1.80
17872--18016	48	3.0	48	92	0	245	26	20	8	44	1.81
24163--24193	16	1.9	16	93	0	53	61	0	16	22	1.34
24894--24987	49	1.9	49	84	0	125	30	14	24	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28905--28992	38	2.3	38	75	7	90	31	12	22	32	1.91
29322--29355	17	2.1	17	88	5	52	35	0	14	50	1.44
36478--36504	2	13.5	2	100	0	54	51	0	0	48	1.00
36654--36810	47	3.3	47	88	0	215	29	14	21	35	1.92
40094--40136	18	2.4	18	80	0	50	23	27	20	27	1.99
40168--40208	14	3.0	14	82	13	50	14	19	24	41	1.89
47285--47333	18	2.7	18	87	0	62	24	32	18	24	1.97
57727--57906	88	2.0	88	94	0	315	35	19	12	32	1.90
58378--58858	244	2.0	244	90	0	757	44	14	7	33	1.73
59642--59682	16	2.7	15	85	10	57	41	7	0	51	1.30
62449--62482	18	1.9	18	88	5	52	29	0	5	64	1.17
63198--63243	24	2.0	24	91	4	76	63	0	2	34	1.07
66936--67017	41	2.0	41	90	0	128	42	23	8	25	1.82
68297--68340	23	1.9	23	86	9	63	25	6	11	56	1.58
79243--79279	18	2.1	18	100	0	74	16	13	16	54	1.72
83541--83573	15	2.2	15	89	10	50	33	0	24	42	1.55
84021--84207	40	4.7	40	80	3	198	29	20	22	27	1.99
84021--84193	80	2.2	80	86	4	233	30	19	22	27	1.98
93041--93079	21	1.9	21	89	5	62	12	12	7	66	1.43
94816--94855	18	2.3	18	86	4	55	17	15	12	55	1.70
101467--101523	24	2.4	24	96	0	105	24	24	26	24	2.00
101782--101853	17	4.2	17	76	3	74	22	19	11	47	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102439--102476	2	19.0	2	100	0	76	50	0	0	50	1.00
111742--111899	80	2.0	79	88	1	235	29	13	20	36	1.91
112339--112461	48	2.6	48	92	0	201	52	16	8	22	1.71
118425--118471	18	2.6	18	93	0	76	29	29	21	19	1.97
124131--124176	12	3.8	12	79	2	56	60	0	34	4	1.16
128254--128349	42	2.4	39	81	10	120	27	13	30	29	1.94
128276--128500	42	5.2	42	74	9	177	23	20	25	31	1.98
128293--128458	89	1.9	89	83	5	219	21	17	28	32	1.96
128231--128547	131	2.5	131	86	5	416	22	19	25	32	1.97
128356--128766	46	9.0	46	75	10	288	24	17	25	32	1.96
128487--128756	96	2.9	93	81	8	280	25	17	23	33	1.96
128489--128766	142	2.0	143	87	0	405	25	16	24	33	1.96
128827--129607	189	4.1	190	80	2	831	25	25	16	32	1.96
128827--129564	377	2.0	377	83	2	953	25	26	16	31	1.96
128868--129562	95	7.4	95	67	12	311	25	26	16	31	1.96
129879--130327	49	9.2	49	77	6	365	23	27	14	34	1.93
129800--130099	98	3.1	96	81	8	252	21	26	15	36	1.93
129870--130315	147	3.0	145	83	3	484	23	27	14	34	1.93
139757--139803	21	2.2	21	88	0	67	59	12	27	0	1.34
146349--146406	17	3.4	17	75	0	62	20	18	12	48	1.80
152837--152869	14	2.3	15	94	5	59	57	6	0	36	1.23
152831--152870	14	2.6	16	84	15	57	57	5	2	35	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
162123--162212	26	3.5	25	80	6	99	27	24	16	31	1.97
173382--173422	17	2.4	18	80	19	52	17	21	14	46	1.84
186085--186141	28	2.0	29	86	3	80	38	0	10	50	1.37
186180--186204	11	2.3	11	100	0	50	8	0	0	92	0.40
187640--187681	18	2.3	18	83	0	57	57	11	26	4	1.54
194930--195055	26	4.8	26	82	3	137	28	22	17	31	1.96
194909--195055	52	2.8	53	79	4	163	29	23	17	30	1.96
195546--196812	627	2.0	632	93	2	2145	37	17	13	32	1.88
202081--202137	30	1.9	29	86	10	80	35	5	12	47	1.64
206604--206642	15	2.6	15	100	0	78	20	23	25	30	1.98
243475--243538	28	2.3	28	94	2	112	42	14	14	29	1.84
253644--253672	15	2.0	15	93	6	51	51	0	48	0	1.00
268567--268610	23	2.0	23	81	4	54	63	0	2	34	1.07
268759--268816	24	2.5	24	78	18	68	51	1	1	44	1.21
270154--270189	9	3.9	9	92	3	54	50	11	2	36	1.53
270431--270472	5	8.2	5	84	5	57	0	26	0	73	0.83
270427--270472	16	2.9	16	93	6	76	0	26	0	73	0.83
274976--275054	23	3.5	22	72	6	59	27	30	13	27	1.95
276373--276490	62	1.9	62	94	3	211	24	17	21	36	1.95
277993--278085	41	2.3	40	80	7	100	34	15	26	23	1.94
279420--279453	12	2.8	12	86	0	50	76	0	17	5	0.98
279420--279453	17	2.0	17	88	11	52	76	0	17	5	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
287136--287310	42	4.1	42	81	6	201	37	9	24	28	1.87
287146--287327	84	2.1	85	83	4	224	37	10	24	26	1.88
289198--289237	16	2.5	16	95	0	71	22	10	12	55	1.67
295898--295945	5	9.2	5	81	4	51	18	4	0	77	0.93
312651--312675	13	1.9	13	100	0	50	72	0	24	4	1.02
314801--314857	9	6.9	9	75	18	61	52	0	1	45	1.11
325517--325576	27	2.2	29	77	17	74	1	30	1	66	1.11
340678--340832	81	1.9	81	87	0	229	23	17	13	45	1.84
345067--345112	18	2.6	18	82	0	65	36	19	17	26	1.94
351008--351052	23	2.0	23	86	8	65	71	0	28	0	0.87
357328--357365	18	2.2	18	86	13	53	23	21	5	50	1.69
358356--358390	11	3.2	11	91	0	52	37	8	0	54	1.31
360507--360558	20	2.6	20	78	0	50	34	9	7	48	1.65
371242--371299	28	2.3	24	85	14	73	17	10	10	62	1.54
383329--383362	12	3.0	11	87	8	50	76	2	2	17	1.04
384145--384195	25	2.0	26	84	3	68	54	3	13	27	1.56
391648--391709	31	2.0	31	100	0	124	58	6	3	32	1.40
391648--391697	17	3.1	17	66	16	52	56	8	4	32	1.47
391890--391958	33	2.1	33	97	0	129	56	14	0	28	1.39
395108--395208	30	3.4	30	84	5	134	33	18	5	41	1.75
395325--395375	18	3.1	16	81	15	52	35	3	1	58	1.28
395333--395375	18	2.4	18	88	7	61	32	4	2	60	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
399829--399999	81	2.1	81	89	3	256	36	16	17	28	1.92
400438--400494	19	3.2	17	80	11	53	80	0	19	0	0.71
400425--400493	7	9.9	7	72	12	52	81	0	15	2	0.81
400426--400497	15	5.1	14	74	16	60	80	0	16	2	0.83
400458--400506	12	3.9	12	80	17	55	81	0	18	0	0.69
400424--400506	27	3.3	25	78	9	80	80	0	16	2	0.81
400449--400505	19	3.0	19	84	5	71	78	0	21	0	0.74
400819--401128	113	2.8	113	91	2	491	31	20	10	38	1.86
401563--401875	50	6.3	50	74	6	210	36	14	28	20	1.92
401559--401836	99	2.8	99	84	5	391	35	15	29	19	1.92

Tables:   1   2