genome.fa.s7460.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01007460.1 Kokia drynarioides strain JFW-HI SEQ_122081, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  612245

Tables:   1   2   

This is table  2  of  2  ( 222 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
401662--402005	149	2.3	149	80	4	390	34	14	30	20	1.92
401854--402040	99	1.9	99	82	2	232	33	13	32	20	1.92
401853--402082	99	2.3	99	79	2	230	33	13	31	21	1.92
401953--402103	49	3.1	49	73	4	133	33	13	29	23	1.93
402329--402489	42	3.9	42	87	4	256	27	26	18	27	1.98
402329--402502	81	2.1	81	93	0	294	27	27	16	28	1.97
404369--404464	28	3.3	29	77	8	90	32	22	6	38	1.79
404381--404464	28	2.9	29	80	8	91	33	20	7	39	1.80
404582--404625	18	2.4	18	81	7	54	29	9	2	59	1.41
414921--414956	14	2.4	16	90	9	58	22	5	16	55	1.62
418851--418925	22	3.2	24	83	7	91	26	12	14	46	1.79
418880--418925	22	2.1	22	100	0	92	21	10	17	50	1.77
423874--424005	65	2.0	65	95	0	237	21	25	22	29	1.99
430590--430754	81	2.0	81	97	0	312	52	6	22	18	1.69
430858--430931	30	2.4	29	77	6	76	39	20	5	35	1.75
432424--432600	27	6.5	27	84	3	221	40	22	14	22	1.90
432424--432600	81	2.2	81	86	1	255	40	22	14	22	1.90
440578--440635	27	2.1	27	96	0	107	25	20	20	32	1.97
446589--446712	41	3.0	41	83	0	167	24	24	20	31	1.98
449694--449729	10	3.7	10	85	7	56	77	0	8	13	0.98
463767--463813	24	2.0	24	84	16	62	17	8	4	70	1.29
478351--478386	19	1.9	18	88	5	54	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
478353--478391	16	2.4	17	82	8	53	46	0	0	53	1.00
479213--479266	26	2.2	23	80	12	54	55	0	0	44	0.99
479786--479816	8	4.0	8	91	8	55	12	0	0	87	0.55
479786--479814	15	1.9	15	100	0	58	10	0	0	89	0.48
486552--486615	26	2.4	26	82	12	78	28	9	7	54	1.60
488487--488566	36	2.2	36	86	2	108	36	21	16	26	1.94
489674--489800	65	2.0	65	98	0	245	43	7	9	40	1.64
498543--498631	5	17.8	5	69	4	54	43	15	3	37	1.64
498547--498631	20	4.2	20	84	0	80	44	15	3	36	1.63
498547--498631	40	2.1	40	82	8	102	44	15	3	36	1.63
501284--501315	2	16.0	2	100	0	64	50	0	0	50	1.00
502065--502128	24	2.7	24	87	0	92	48	17	12	21	1.80
502113--502277	23	7.1	23	72	6	109	47	24	15	13	1.81
506986--507011	7	3.7	7	100	0	52	57	0	42	0	0.98
507868--507939	19	3.7	19	82	10	83	47	4	1	47	1.30
516209--516289	27	3.1	25	76	15	74	75	2	4	17	1.09
516250--516288	13	2.9	13	88	3	60	76	0	2	20	0.90
516247--516289	20	2.2	19	83	4	50	79	0	2	18	0.85
516212--516289	33	2.3	34	80	12	90	74	2	5	17	1.12
517019--517318	160	1.9	161	83	6	394	24	16	23	36	1.94
517038--517367	80	4.1	80	82	4	330	24	15	24	35	1.94
518334--518378	18	2.5	17	82	7	54	73	6	4	15	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
518542--518568	14	1.9	14	100	0	54	81	3	0	14	0.82
519512--519562	24	2.1	24	85	7	68	15	1	31	50	1.55
520076--520476	101	4.0	101	80	3	459	26	17	17	38	1.92
520043--520483	202	2.2	201	84	4	568	26	17	17	37	1.93
520076--520462	51	7.6	51	71	11	258	26	18	16	37	1.92
521302--521339	20	2.0	20	89	5	60	5	10	0	84	0.77
521300--521341	17	2.6	16	78	14	50	7	11	0	80	0.88
529086--529231	19	7.7	19	76	4	125	27	16	30	26	1.97
529086--529234	38	3.9	37	78	6	140	28	16	29	26	1.97
529084--529204	56	2.1	57	86	4	165	28	17	28	25	1.97
530347--530539	98	2.0	97	85	1	260	38	15	17	27	1.90
530811--530952	57	2.5	56	80	10	153	33	3	26	36	1.74
530796--530984	58	3.3	58	77	10	167	33	3	26	36	1.73
530790--530992	28	7.0	30	72	11	95	33	2	27	35	1.72
532606--532682	17	4.5	17	83	3	91	54	3	1	40	1.27
532606--532682	35	2.2	34	86	2	100	54	3	1	40	1.27
533046--533644	39	15.4	38	71	11	324	26	18	30	24	1.98
533150--533515	117	3.1	116	81	6	375	25	19	30	24	1.98
533195--533566	117	3.2	116	81	4	408	25	19	31	24	1.98
533150--533721	39	14.7	38	72	13	264	25	19	30	24	1.98
533028--533685	78	8.4	77	75	10	482	25	19	30	24	1.98
533663--533734	37	1.9	37	82	0	90	29	22	22	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
545542--545802	58	4.4	60	74	7	196	37	1	24	36	1.67
545694--545777	30	2.8	30	87	5	109	42	0	19	38	1.51
545559--545802	29	8.3	28	76	7	173	37	1	23	37	1.65
547325--547453	6	22.3	6	69	16	76	54	3	0	41	1.21
547325--547435	35	3.2	33	75	13	107	54	2	0	43	1.14
547325--547453	17	7.5	17	80	6	134	54	3	0	41	1.21
550552--550602	21	2.4	21	80	6	59	70	7	0	21	1.12
550647--550678	15	2.1	15	94	0	55	53	9	12	25	1.68
550807--550877	11	5.8	12	76	23	60	74	5	4	15	1.16
550857--550902	14	3.2	14	88	11	67	78	4	0	17	0.91
550845--550902	26	2.2	27	84	9	75	77	5	0	17	0.94
551172--551210	19	2.2	17	86	9	51	71	0	5	23	1.05
551189--551213	13	1.9	13	100	0	50	80	0	4	16	0.87
552152--552210	24	2.5	22	82	12	73	15	3	35	45	1.63
552152--552213	23	2.6	24	85	9	83	16	3	33	46	1.63
554854--554901	20	2.4	20	100	0	96	35	6	12	45	1.67
560152--560220	24	2.8	24	77	2	75	37	24	17	20	1.93
565907--565951	23	1.9	23	86	4	63	35	17	4	42	1.70
567794--567831	20	1.9	19	89	5	58	50	5	5	39	1.48
569582--569645	23	2.8	23	92	0	101	25	3	4	67	1.25
569857--569898	14	3.0	14	83	10	59	21	2	0	76	0.90
576367--576589	52	4.3	52	84	1	277	26	15	22	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
584828--585025	52	3.8	52	84	3	211	26	13	21	38	1.90
584825--585063	104	2.3	104	80	1	264	26	13	23	36	1.92
584891--585063	52	3.3	52	81	1	168	26	13	24	35	1.93
585650--585689	21	1.9	21	89	0	62	27	12	22	37	1.90
590618--590899	106	2.7	104	78	8	297	32	15	20	30	1.94
590638--590978	101	3.3	100	75	10	287	33	15	20	29	1.94
591326--591445	50	2.3	52	88	4	181	49	7	3	40	1.48
592833--592895	24	2.6	23	82	9	81	26	3	7	61	1.39
593606--593654	23	2.2	23	82	10	57	20	4	12	63	1.45
610995--611038	17	2.6	17	86	10	63	45	2	2	50	1.27
610995--611048	6	9.3	6	76	15	51	48	3	3	44	1.38
611073--611109	16	2.4	16	86	13	51	43	29	13	13	1.82
611727--611756	3	9.7	3	92	7	51	63	0	0	36	0.95
611727--611766	12	3.2	13	89	6	57	60	0	2	37	1.11

Tables:   1   2

The End!