genome.fa.s7763.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01007763.1 Kokia drynarioides strain JFW-HI SEQ_122396, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  237200

Tables:   1   2   

This is table  1  of  2  ( 143 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1869--1927	20	2.9	21	82	5	68	35	1	18	44	1.60
2630--2655	3	8.7	3	100	0	52	69	0	0	30	0.89
3346--3416	37	1.9	37	85	5	99	15	5	4	74	1.16
3783--3829	8	5.9	8	78	9	51	61	2	0	36	1.08
3782--3829	15	3.1	15	79	8	51	62	2	0	35	1.07
3783--3829	23	2.0	25	87	8	71	61	2	0	36	1.08
4850--4906	29	2.0	29	85	0	78	50	0	1	47	1.11
6036--6060	11	2.3	11	100	0	50	44	8	24	24	1.80
6261--6370	24	4.6	24	94	2	159	18	53	16	11	1.72
6288--6404	24	5.1	22	90	5	121	17	54	13	14	1.71
6345--6417	21	3.5	21	90	0	110	15	56	10	17	1.67
6345--6439	21	4.4	21	86	4	91	15	53	10	20	1.71
8544--8592	26	2.0	24	84	15	64	48	2	6	42	1.39
13737--13925	90	2.1	88	81	10	215	24	16	13	45	1.83
13804--13863	31	1.9	31	86	0	84	26	20	10	43	1.83
14851--14966	57	2.0	57	100	0	232	37	15	5	42	1.69
15204--15271	30	2.3	29	87	2	91	60	1	5	32	1.30
15243--15298	18	2.9	18	81	7	67	60	0	3	35	1.14
15233--15298	19	3.3	19	77	14	71	62	1	3	33	1.20
17540--17592	21	2.5	21	75	6	54	37	9	20	32	1.85
19041--19147	53	2.0	53	100	0	214	51	3	7	37	1.48
19924--20237	50	6.3	50	86	1	378	36	16	25	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19924--20237	100	3.1	100	86	2	425	36	16	25	21	1.94
19970--20203	26	9.3	26	64	17	91	35	16	26	21	1.94
19987--20127	24	5.7	23	65	22	72	34	16	28	21	1.95
24198--24479	50	5.6	50	83	1	314	38	15	24	21	1.92
31612--31690	26	3.0	26	83	0	95	41	15	22	20	1.89
35954--35978	3	8.3	3	100	0	50	64	0	36	0	0.94
37811--37854	16	2.7	16	82	3	52	54	0	2	43	1.12
39717--39848	47	2.8	47	88	0	192	36	18	14	30	1.91
39919--39958	20	2.0	20	95	0	71	37	17	0	45	1.49
47893--48085	25	7.6	25	77	5	156	34	25	16	23	1.95
47909--48085	50	3.5	50	79	3	185	34	24	16	23	1.96
47961--48129	75	2.2	77	81	3	198	35	24	14	24	1.94
47961--48191	25	8.9	27	80	5	167	37	25	14	23	1.92
48063--48193	27	4.9	27	81	6	142	39	24	11	24	1.88
57093--57130	20	1.9	20	88	0	58	13	10	7	68	1.39
58006--58051	2	23.0	2	95	0	83	52	0	0	47	1.00
62501--62561	20	3.1	20	84	13	74	32	22	13	31	1.92
63365--63410	20	2.3	20	92	0	74	10	13	36	39	1.79
65592--65638	24	2.0	24	83	8	60	38	6	0	55	1.26
65625--65770	57	2.5	57	79	10	161	45	1	2	50	1.24
65616--65776	58	2.8	57	78	10	166	43	1	2	52	1.25
65932--65971	16	2.5	16	87	0	62	30	32	5	32	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66118--66306	57	3.3	56	78	8	186	54	9	8	26	1.62
67412--67444	2	17.0	2	93	6	59	51	0	0	48	1.00
69004--69056	15	3.4	16	82	7	65	30	16	0	52	1.44
77039--77221	39	4.7	39	81	1	188	36	19	19	25	1.95
77037--77223	78	2.4	78	82	1	223	36	19	19	24	1.95
79654--79764	55	2.0	55	100	0	222	38	16	21	23	1.92
88080--88135	11	5.5	11	79	12	66	33	0	0	66	0.92
88080--88135	20	2.7	21	75	8	62	33	0	0	66	0.92
88080--88147	31	2.2	31	81	5	75	33	0	2	63	1.10
88723--88757	18	1.9	18	88	0	52	54	5	0	40	1.24
90887--90940	21	2.5	20	77	19	56	37	1	3	57	1.27
97869--97922	20	2.8	20	80	8	58	57	5	1	35	1.33
98905--98974	34	2.1	34	83	5	88	55	7	1	35	1.36
99090--99132	17	2.4	18	81	14	54	46	0	2	51	1.13
99235--99264	9	3.2	9	90	9	51	20	0	0	80	0.72
99230--99264	10	3.5	10	88	11	54	22	0	0	77	0.78
100240--100280	20	2.0	20	95	0	73	46	17	4	31	1.69
104202--104239	18	2.1	19	95	5	69	34	26	10	28	1.90
114570--114609	21	1.9	21	84	0	53	27	12	15	45	1.82
115749--115797	25	2.0	25	95	0	89	24	0	8	67	1.18
129669--129750	23	3.6	22	80	9	94	37	0	3	58	1.16
129669--129748	6	13.8	6	77	12	69	38	0	3	57	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
129669--129748	17	4.6	18	78	9	69	38	0	3	57	1.17
131500--131731	30	8.0	30	74	8	126	36	24	2	36	1.68
131497--131617	30	4.1	30	82	2	127	37	23	0	38	1.61
131497--131702	59	3.5	59	78	9	183	36	25	1	35	1.68
131570--131702	28	4.6	29	77	5	110	36	26	2	35	1.69
131880--131923	16	2.9	16	90	6	65	22	11	6	59	1.55
132103--132176	37	2.0	37	91	0	121	33	21	10	33	1.88
142859--142885	3	9.0	3	100	0	54	66	0	33	0	0.92
146525--146585	21	2.9	21	77	0	59	37	16	18	27	1.92
153385--153694	78	4.0	78	85	2	408	23	31	19	25	1.98
153388--153808	117	3.6	117	77	10	332	23	31	19	25	1.98
153395--153889	78	6.3	78	80	9	360	24	30	18	25	1.98
153431--153905	39	12.2	39	70	6	264	24	31	18	25	1.98
154360--154392	17	2.0	17	88	5	50	39	0	3	57	1.14
154360--154415	23	2.4	23	87	0	76	37	1	5	55	1.33
154360--154479	6	20.8	6	73	14	83	43	1	2	52	1.24
154420--154478	23	2.6	23	94	0	109	50	0	0	49	1.00
154383--154447	17	3.8	17	83	0	85	40	3	3	53	1.32
154434--154484	17	2.9	17	77	13	59	52	0	0	47	1.00
154409--154484	40	1.9	40	86	5	109	50	1	0	48	1.09
155161--155228	4	17.5	4	71	17	54	66	0	2	30	1.07
155159--155227	11	6.4	11	69	21	56	65	0	2	31	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
155149--155226	27	2.9	27	96	3	140	61	1	3	33	1.22
156251--156464	29	7.3	29	84	6	247	35	22	1	40	1.65
156254--156544	58	5.0	58	78	10	272	35	23	2	39	1.67
156255--156532	29	9.6	29	77	11	198	35	23	1	38	1.65
162528--162571	15	2.9	15	79	3	52	63	2	0	34	1.07
164094--164128	14	2.5	14	90	0	52	45	2	17	34	1.63
166629--166664	13	2.6	14	86	8	56	36	0	63	0	0.94
175722--175804	24	3.3	24	73	12	85	22	26	15	34	1.94
175733--175831	28	3.7	28	73	10	107	21	25	16	37	1.93
175672--175858	52	3.6	52	88	2	241	25	25	14	34	1.94
177433--177490	21	2.8	21	84	5	73	36	22	15	25	1.94
177899--177940	21	2.0	21	100	0	84	38	14	9	38	1.78
178034--178084	22	2.4	22	87	12	72	33	13	35	17	1.89
178034--178092	20	2.8	21	82	10	68	33	13	33	18	1.90
180236--180327	41	2.2	41	88	1	130	42	7	21	28	1.80
180367--180503	40	3.4	40	92	0	220	45	8	24	21	1.79
181744--181787	3	14.3	3	90	4	70	68	0	31	0	0.90
181745--181810	12	5.2	12	83	12	71	69	1	27	1	1.06
181748--181793	21	2.1	22	92	8	76	71	0	28	0	0.86
183787--183897	42	2.6	42	78	5	143	25	27	19	27	1.99
184857--184945	20	4.4	20	82	4	99	37	21	31	10	1.87
186974--187018	19	2.4	19	81	7	56	73	0	26	0	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
186975--187018	12	3.4	14	82	14	51	72	0	27	0	0.85
192319--192346	2	14.0	2	100	0	56	0	50	0	50	1.00
201059--201125	34	2.0	34	100	0	134	26	14	17	40	1.89
202984--203068	16	5.3	15	72	10	62	56	28	2	12	1.49
206101--206673	29	19.6	29	73	15	277	35	25	4	34	1.77
206102--206724	87	7.1	88	78	9	465	35	25	5	33	1.80
206205--206673	59	8.1	58	74	12	272	34	26	5	33	1.78
206074--206674	59	10.3	57	74	11	271	35	25	4	33	1.77
206205--206782	29	19.9	29	74	10	316	34	25	6	33	1.82
206512--206753	59	4.1	58	73	7	195	33	23	8	33	1.86

Tables:   1   2