genome.fa.s7763.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01007763.1 Kokia drynarioides strain JFW-HI SEQ_122396, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  237200

Tables:   1   2   

This is table  2  of  2  ( 143 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
208747--208922	97	1.8	97	85	7	250	37	14	19	27	1.92
209140--209200	28	2.2	28	79	2	70	34	9	22	32	1.87
209240--209529	59	4.9	58	76	12	243	40	3	25	30	1.73
209359--209443	29	2.9	29	73	18	86	41	1	24	32	1.63
209355--209443	28	3.0	29	76	12	101	40	1	24	33	1.63
209482--209559	29	2.6	29	86	8	95	46	6	23	24	1.75
209334--209559	119	1.9	119	81	7	280	42	3	23	29	1.72
209513--209618	31	3.5	30	80	14	112	40	4	26	28	1.76
210783--210833	22	2.5	20	78	12	57	33	11	0	54	1.37
212223--212393	94	1.8	94	82	2	218	36	18	23	21	1.95
212382--212471	27	3.3	27	82	0	126	33	18	25	22	1.97
212382--212497	54	2.1	54	82	6	137	34	18	25	21	1.96
216656--216704	21	2.3	21	85	0	62	34	30	10	24	1.89
217487--217586	36	2.8	35	90	3	146	25	25	16	34	1.95
225318--225345	2	14.0	2	100	0	56	50	50	0	0	1.00
225691--225835	23	6.5	23	68	16	108	46	20	21	12	1.83
225697--225771	39	1.9	39	86	0	105	45	20	21	13	1.84
227361--227396	18	2.0	18	88	0	54	41	8	0	50	1.33
231808--231874	26	2.6	27	81	13	88	41	31	7	19	1.79
232926--232964	20	2.1	19	85	9	53	41	0	2	56	1.13
232490--233706	604	2.0	608	92	2	2030	33	12	11	41	1.80
234660--234702	12	3.5	12	80	3	50	79	0	11	9	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
237171--237200	2	15.0	2	100	0	60	50	0	0	50	1.00

Tables:   1   2

The End!