genome.fa.s8016.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01008016.1 Kokia drynarioides strain JFW-HI SEQ_122670, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7924

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
236--359	62	2.0	62	90	0	194	28	19	14	37	1.91
1--627	278	2.3	278	84	2	796	27	17	15	39	1.90
511--700	62	3.0	62	76	8	188	26	16	16	40	1.90
237--913	341	2.0	340	87	4	990	26	17	16	39	1.91
635--1115	216	2.2	215	85	2	642	27	17	15	40	1.89
1067--1193	62	2.0	62	87	0	182	28	15	16	39	1.89
852--1470	277	2.2	277	83	5	752	28	17	14	39	1.89
1347--1532	62	3.0	62	87	1	257	27	19	14	37	1.91
1600--1787	63	3.0	60	83	6	225	27	18	17	36	1.93
1722--2650	214	4.3	216	82	6	1139	27	17	14	40	1.88
2534--2574	20	2.0	20	85	4	55	34	4	14	46	1.66
2586--2712	62	2.0	62	87	0	182	27	15	15	40	1.88
2879--3051	61	2.8	62	85	5	251	24	20	16	38	1.93
2371--2977	277	2.2	276	82	5	769	28	17	14	39	1.89
3202--3375	62	2.8	62	90	0	267	25	17	17	39	1.91
2586--3594	340	3.0	339	84	2	1287	26	17	15	39	1.90
3326--4464	216	5.3	214	80	5	1181	27	17	15	39	1.90
4189--4792	275	2.2	275	80	7	666	27	18	15	38	1.91
4706--4854	62	2.4	62	81	1	172	24	20	16	38	1.93
4706--4870	63	2.6	62	80	2	179	25	20	16	37	1.93
4805--5302	216	2.3	215	83	3	606	28	18	15	38	1.91
5241--5420	62	2.9	62	93	0	297	26	18	16	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4471--5642	556	2.1	557	84	2	1545	27	18	16	38	1.91
5022--5973	340	2.8	338	84	2	1201	27	18	15	38	1.90
5578--5766	62	3.0	61	84	5	245	27	17	16	38	1.92
5362--6528	556	2.1	557	87	1	1669	26	17	16	39	1.90
5701--6198	217	2.3	216	82	6	625	26	16	16	40	1.90
6134--6323	62	3.0	61	80	5	204	26	18	15	38	1.91
4409--6877	897	2.8	895	86	2	3350	26	17	16	39	1.91
6171--6323	63	2.5	62	84	3	200	25	19	15	39	1.91
6475--6663	62	3.0	62	85	0	252	26	18	16	37	1.92
5917--7265	340	4.0	341	84	2	1622	26	17	16	39	1.90
6815--6985	62	2.8	61	82	5	177	26	15	18	39	1.90
7430--7615	62	3.0	61	85	3	255	28	18	16	37	1.92
7155--7922	341	2.3	336	90	2	1200	29	17	15	37	1.91
7771--7924	62	2.5	61	91	4	245	25	19	16	38	1.92

Tables:   1

The End!