genome.fa.s816.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01000816.1 Kokia drynarioides strain JFW-HI SEQ_111903, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  253564

Tables:   1   2   

This is table  2  of  2  ( 155 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
167544--168238	145	4.8	145	87	2	907	21	20	17	40	1.92
167544--168238	289	2.4	288	86	2	930	21	20	17	40	1.92
172296--172618	59	5.5	57	77	5	270	37	3	23	35	1.72
172331--172570	88	2.7	86	84	6	284	37	3	24	34	1.72
172296--172627	29	11.3	29	78	6	274	37	3	24	35	1.72
172419--172664	29	8.6	28	75	11	99	36	1	22	39	1.62
173333--173382	3	16.7	3	100	0	100	32	0	0	68	0.90
174607--175421	209	3.9	210	85	3	1038	24	20	16	39	1.92
174593--175454	419	2.1	417	84	3	1137	24	20	16	38	1.92
175265--175614	160	2.2	161	85	4	467	26	19	17	37	1.93
175493--175818	85	4.0	84	72	12	253	22	21	17	38	1.93
175531--175819	160	1.8	160	87	0	434	22	21	17	38	1.93
183659--183732	30	2.5	29	84	4	94	33	4	24	37	1.74
183601--183993	29	13.4	29	73	6	184	38	4	22	34	1.74
183659--183978	59	5.4	60	74	7	235	38	3	24	34	1.71
183864--184022	59	2.7	59	83	2	178	42	1	18	37	1.59
185053--185086	2	17.5	2	87	6	52	55	0	0	44	0.99
187207--187367	30	5.4	30	72	7	121	38	8	18	34	1.80
189993--190111	30	4.0	30	84	0	148	40	5	17	36	1.72
190231--190305	35	2.1	35	95	0	132	61	6	8	24	1.48
192667--192700	4	8.8	4	87	6	52	76	0	23	0	0.79
192658--192704	16	2.8	17	75	18	53	76	0	23	0	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
193636--193698	6	10.8	6	81	8	69	80	0	19	0	0.70
193636--193691	13	4.2	13	76	17	53	82	0	17	0	0.68
194773--194802	15	1.9	16	93	6	53	73	0	3	23	0.98
197281--197322	21	2.0	21	86	9	59	59	0	4	35	1.19
197678--197704	13	2.1	13	100	0	54	0	14	0	85	0.61
199455--199570	30	3.9	30	84	3	146	33	19	6	39	1.79
199446--199573	60	2.1	60	85	0	166	35	17	7	39	1.79
217030--217091	23	2.7	22	90	2	88	59	16	6	17	1.57
230279--230335	23	2.5	23	100	0	114	19	22	29	28	1.98
230279--230345	23	3.0	21	91	6	82	20	25	29	23	1.99
232223--232263	3	13.7	3	100	0	82	31	0	0	68	0.90
232576--232614	21	1.9	21	85	15	55	64	0	0	35	0.94
241595--241737	70	2.0	70	98	0	277	36	11	14	37	1.82

Tables:   1   2

The End!