genome.fa.s8750.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01008750.1 Kokia drynarioides strain JFW-HI SEQ_123432, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37711

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--3768	216	17.5	216	84	4	4183	39	14	17	28	1.89
1--3768	647	5.8	647	82	5	4270	39	14	17	28	1.89
1--3768	431	8.8	431	83	4	4284	39	14	17	28	1.89
3599--3940	172	2.0	172	85	4	458	40	13	17	28	1.87
3801--4847	216	4.9	215	83	2	1230	40	14	16	28	1.88
3771--4798	434	2.4	422	84	3	1331	39	14	17	28	1.89
5318--5467	80	1.9	80	92	2	257	28	14	21	35	1.93
5916--6044	48	2.7	48	89	1	188	51	14	9	24	1.72
6346--7015	216	3.1	216	90	0	1009	40	14	17	27	1.88
6874--7180	167	1.8	167	83	2	402	38	14	21	25	1.92
6658--7398	383	1.9	383	86	1	1036	39	14	19	26	1.90
7014--11433	216	20.5	216	81	3	4537	39	14	17	28	1.89
13985--14342	181	2.0	180	87	2	513	41	14	17	26	1.88
14164--14620	214	2.1	214	82	5	555	39	13	17	28	1.88
20729--23677	216	13.5	216	76	6	2345	40	14	17	27	1.88
20729--28364	432	17.5	431	76	8	5923	40	14	16	28	1.88
20729--28360	647	11.7	647	77	7	5582	40	14	16	28	1.88
23114--23155	19	2.0	21	86	13	61	50	9	14	26	1.73
21932--27907	863	6.8	890	75	10	4049	40	13	16	28	1.88
24219--28372	216	19.1	216	75	9	2896	40	13	17	29	1.88
27921--28021	53	1.9	53	87	4	150	38	11	18	30	1.87
28108--28156	19	2.3	21	80	20	57	48	12	14	24	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28502--28534	17	1.9	17	88	11	50	27	0	6	66	1.15
28768--28883	50	2.3	52	83	5	148	35	16	12	36	1.86
32619--32651	17	1.9	17	88	11	50	27	0	6	66	1.15
32833--32930	50	2.0	49	82	9	121	38	14	11	35	1.82
32846--33001	50	3.1	50	77	8	154	36	16	11	35	1.84
34385--34493	53	2.1	53	87	3	157	40	12	17	29	1.87
34170--34685	269	1.9	268	83	3	662	39	14	16	29	1.88
34854--35200	182	1.9	182	86	3	500	38	15	16	29	1.89
35040--35901	215	4.0	215	79	4	896	39	14	16	29	1.88

Tables:   1

The End!