Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009393.1 Kokia drynarioides strain JFW-HI SEQ_124100, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90601

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1001--1278
144
1.9
142
80
8
321
36
15
19
28
1.93
1047--1350
144
2.1
145
87
4
436
35
16
20
27
1.94
4905--5001
28
3.4
28
72
18
99
41
12
19
26
1.87
4862--5011
59
2.6
58
86
3
210
48
12
16
23
1.79
8712--8822
54
2.1
54
100
0
222
27
18
18
35
1.94
10971--11027
28
2.0
28
96
0
105
50
5
17
26
1.67
11803--11998
55
3.6
54
85
2
250
49
16
9
24
1.75
16690--16727
2
19.5
2
83
5
51
44
2
0
52
1.14
16701--16803
54
1.9
54
90
4
163
32
9
3
54
1.51
17809--17858
26
2.0
26
84
11
68
24
4
2
70
1.15
17802--17874
25
2.8
24
80
17
67
23
2
5
68
1.24
17931--17973
2
21.5
2
100
0
86
48
0
0
51
1.00
27069--27118
9
5.4
9
77
17
50
6
16
0
78
0.95
37004--37053
24
2.1
24
88
7
75
44
0
2
54
1.11
36959--37073
35
3.3
35
87
2
151
44
0
1
53
1.17
36959--37073
17
6.6
18
82
8
139
44
0
1
53
1.17
36959--37075
6
20.0
6
67
16
68
45
0
1
52
1.17
38900--39262
30
12.2
30
79
6
344
35
30
3
29
1.75
38900--39299
90
4.5
89
78
8
393
35
30
3
30
1.75
38900--39328
30
14.4
29
77
11
298
34
30
3
30
1.76
44834--44873
5
8.6
5
88
5
50
60
2
0
37
1.11
44834--44879
23
2.0
22
84
12
58
58
2
0
39
1.10
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49936--50100
55
3.0
54
88
3
242
49
15
9
24
1.75
49936--50100
54
3.0
55
88
3
244
49
15
9
24
1.75
56896--57310
49
8.5
48
73
9
297
40
18
24
16
1.91
57037--57320
97
2.9
97
84
4
324
41
20
22
15
1.90
56896--57214
147
2.2
147
84
4
403
39
17
26
16
1.91
57343--58018
339
2.0
338
97
0
1271
30
18
24
26
1.98
58091--58156
17
3.6
18
82
13
80
37
3
1
57
1.23
58969--59049
22
3.5
22
73
12
63
56
1
6
35
1.32
59010--59048
19
2.1
19
85
0
51
56
0
0
43
0.99
60033--60262
29
7.9
30
70
16
137
33
26
1
39
1.65
60034--60249
58
3.7
58
81
9
253
34
25
1
38
1.65
62060--62154
47
2.0
47
93
0
163
32
6
24
36
1.81
62556--62634
31
2.6
30
78
13
90
27
20
10
41
1.84
62511--62688
89
2.0
90
83
5
227
25
18
10
44
1.82
62923--63029
31
3.5
31
71
16
98
44
9
17
28
1.80
62859--63029
59
2.9
60
87
1
229
46
11
15
25
1.80
66139--66434
144
2.1
143
79
8
316
36
16
19
27
1.93
69794--69833
21
2.0
20
85
5
53
60
5
2
32
1.32
69842--69973
55
2.4
55
85
2
176
50
17
6
25
1.68
70676--70721
18
2.5
19
82
10
60
65
0
0
34
0.93
70657--70720
24
2.8
24
78
4
69
65
1
0
32
1.02
80238--80264
13
2.1
13
100
0
54
25
7
7
59
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
80765--80800
3
12.0
3
93
0
63
36
0
63
0
0.94
82852--82909
29
2.0
29
89
0
89
37
10
6
44
1.65
83956--84045
12
7.9
12
68
10
64
71
20
2
6
1.20
83942--84018
23
3.5
21
81
15
93
68
19
2
9
1.28
83909--84034
20
5.8
20
71
16
83
69
17
3
8
1.29
83942--84034
44
2.1
44
84
4
116
70
18
2
8
1.22
84027--84081
26
2.1
27
86
10
78
72
16
5
5
1.22
89236--89268
16
2.1
16
94
0
57
48
6
33
12
1.65
89872--89914
11
3.9
11
87
9
52
39
0
6
53
1.28
89894--89979
6
15.0
6
68
18
58
41
4
1
52
1.30
89943--89975
16
2.1
15
94
5
57
48
0
0
51
1.00
89942--89979
10
3.5
11
86
13
53
50
0
0
50
1.00

Tables:   1

The End!