genome.fa.s9427.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009427.1 Kokia drynarioides strain JFW-HI SEQ_124134, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  447112

Tables:   1   2   

This is table  2  of  2  ( 148 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
333012--333046	17	2.1	16	89	5	52	31	2	5	60	1.35
334855--334892	6	6.3	6	100	0	76	0	18	31	50	1.47
360615--360756	50	2.8	51	82	1	169	30	21	17	30	1.96
363799--363989	28	6.8	28	79	8	192	21	17	25	35	1.95
363804--363988	84	2.2	84	86	5	250	22	16	25	35	1.95
363834--364016	84	2.2	84	80	5	201	24	17	24	34	1.96
363835--364017	56	3.3	56	86	1	242	24	17	24	34	1.96
363990--364128	28	5.0	28	83	1	172	29	12	23	35	1.91
365831--365864	16	2.1	16	94	0	59	50	2	26	20	1.63
368550--368585	12	3.1	12	92	4	56	0	38	2	58	1.13
380395--380453	26	2.3	26	85	5	75	35	13	8	42	1.75
380406--380456	26	2.0	26	92	7	86	29	13	11	45	1.79
391636--391708	30	2.4	30	93	0	119	41	13	9	35	1.77
399585--399628	23	2.0	22	86	4	61	45	15	0	38	1.47
399851--399919	34	2.0	34	100	0	138	43	2	20	33	1.67
405614--405638	12	2.1	12	100	0	50	40	20	16	24	1.91
408575--408816	52	4.7	52	89	4	373	26	16	23	33	1.96
408575--408809	102	2.3	103	90	3	382	26	17	22	33	1.96
408575--408870	52	5.8	52	86	4	251	28	15	22	33	1.95
414781--414814	17	2.0	17	100	0	68	41	11	23	23	1.87
415624--415816	52	3.8	52	76	9	193	27	14	23	34	1.94
421199--421255	23	2.5	23	82	5	71	24	12	22	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
426407--426461	10	5.6	10	75	16	53	43	1	1	52	1.22
426417--426489	30	2.4	29	77	8	76	35	4	2	57	1.32
428827--428858	14	2.4	14	90	10	50	71	0	3	25	1.00
428984--429033	24	2.1	24	100	0	100	50	10	20	20	1.76
442671--442710	14	3.0	13	82	7	53	20	5	25	50	1.68
442670--442726	27	2.1	27	80	6	62	24	3	17	54	1.59

Tables:   1   2

The End!