genome.fa.s9429.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009429.1 Kokia drynarioides strain JFW-HI SEQ_124136, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74511

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4597--4671	23	3.3	23	63	10	64	44	4	10	41	1.58
4598--4688	45	2.0	45	100	0	182	41	4	10	42	1.60
13971--14066	40	2.4	41	80	14	103	67	5	5	21	1.30
14104--14138	13	2.6	14	86	4	54	77	5	0	17	0.96
14432--14510	27	3.1	26	73	15	76	39	13	10	36	1.79
14925--15492	45	12.8	45	81	5	482	26	15	26	31	1.96
14925--15488	89	6.3	89	83	5	588	26	15	26	31	1.96
14924--15492	222	2.5	222	83	4	680	27	15	26	31	1.96
15553--16018	49	9.5	49	74	4	323	21	21	15	42	1.89
15559--16016	98	4.7	98	79	5	460	20	21	15	42	1.89
15531--15985	196	2.3	196	81	1	520	21	20	16	42	1.89
29649--29724	3	25.3	3	100	0	152	32	0	0	67	0.91
29647--29759	15	8.3	13	86	7	61	26	0	3	69	1.11
31054--31107	27	2.0	27	92	0	90	25	18	22	33	1.97
31110--31203	24	3.9	24	92	0	152	23	18	26	31	1.97
31114--31220	48	2.2	48	86	3	144	21	18	28	31	1.97
37122--37192	32	2.2	32	87	7	101	32	15	18	33	1.92
37605--37637	2	16.5	2	93	0	57	48	0	0	51	1.00
39112--39148	17	2.1	19	90	10	60	40	0	5	54	1.24
40464--40497	16	2.1	17	88	5	52	58	0	20	20	1.39
42833--42857	7	3.6	7	100	0	50	12	44	0	44	1.41
44293--44409	58	1.9	58	85	10	155	49	11	15	23	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44550--44604	29	1.9	28	88	3	83	25	7	7	60	1.49
49758--49800	14	3.0	14	79	3	50	44	0	4	51	1.22
50931--50971	19	2.2	19	86	4	57	31	0	2	65	1.05
52980--53037	30	1.9	31	85	3	82	29	20	3	46	1.67
55452--55484	15	2.1	16	88	5	50	30	15	9	45	1.77
56930--56967	12	3.0	13	85	14	53	52	0	0	47	1.00
60345--60457	51	2.2	53	87	3	158	27	14	23	34	1.93
61615--61704	45	2.0	45	100	0	180	28	22	4	44	1.72
70461--70494	3	11.3	3	100	0	68	35	0	0	64	0.94
70903--71573	150	4.4	149	83	6	753	43	2	9	44	1.50
72113--72153	17	2.4	18	84	8	50	21	7	0	70	1.11
72589--73058	240	2.0	237	89	1	724	36	7	15	41	1.75

Tables:   1

The End!