genome.fa.s9633.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009633.1 Kokia drynarioides strain JFW-HI SEQ_124350, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  296665

Tables:   1   2   

This is table  2  of  2  ( 150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
233444--233595	59	2.6	57	80	12	177	35	27	3	33	1.73
233334--233826	28	17.1	29	72	13	186	34	26	4	34	1.75
233472--233567	29	3.3	29	73	9	88	35	26	3	35	1.72
233344--233684	144	2.4	144	82	8	392	34	26	3	34	1.73
233369--233793	28	14.8	29	72	13	199	35	25	3	35	1.73
233608--233742	57	2.3	60	87	5	188	33	22	4	40	1.74
233344--233794	144	3.1	143	77	9	382	35	25	3	35	1.74
233608--233793	57	3.2	56	79	8	155	36	22	3	37	1.72
233751--233927	28	6.2	28	72	7	115	31	27	8	32	1.87
236927--236958	17	1.9	16	93	6	55	0	3	37	59	1.13
238328--238362	6	5.8	6	87	12	54	68	0	0	31	0.90
239776--239818	23	2.0	22	86	9	61	46	13	0	39	1.44
242586--242680	29	3.2	28	71	12	75	49	20	3	27	1.64
243732--243803	29	2.4	30	79	2	83	23	5	19	51	1.68
244658--244728	31	2.2	32	90	5	108	46	7	2	43	1.45
248550--248601	11	5.1	10	77	13	52	55	0	1	42	1.10
248549--248601	20	2.6	20	81	3	61	56	0	1	41	1.10
248524--248618	36	2.7	34	77	16	95	53	0	1	45	1.07
250912--250964	18	3.1	18	81	13	58	66	0	0	33	0.92
252620--252680	19	3.2	19	74	4	61	39	18	22	19	1.92
254375--254403	3	10.0	3	92	7	51	31	0	0	68	0.89
256898--256940	19	2.3	19	87	0	59	30	20	25	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
256951--257015	27	2.4	27	84	0	76	24	21	30	23	1.99
272357--272463	31	3.5	30	76	8	101	25	18	17	38	1.93
272745--272780	18	2.0	18	94	0	63	58	5	0	36	1.22
272908--272955	21	2.4	19	76	13	51	56	0	2	41	1.11
282789--282826	13	3.0	13	85	14	53	63	2	15	18	1.43
282778--282826	25	2.0	25	84	15	66	61	2	16	20	1.44
282894--282975	22	3.7	21	73	19	60	68	4	0	26	1.10
292082--292196	60	1.9	60	94	1	205	31	13	20	33	1.92

Tables:   1   2

The End!