genome.fa.s9767.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009767.1 Kokia drynarioides strain JFW-HI SEQ_124487, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  569295

Tables:   1   2   

This is table  1  of  2  ( 146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9002--9056	25	2.2	26	86	3	76	69	5	0	25	1.10
9129--9181	23	2.4	21	84	6	70	67	7	7	16	1.38
9215--9268	23	2.3	24	81	9	67	79	12	1	5	0.98
12517--12769	75	3.4	74	83	3	312	33	18	24	22	1.97
15620--15667	9	5.2	9	77	22	55	52	0	0	47	1.00
15613--15667	19	2.9	19	75	21	62	52	0	1	45	1.11
15621--15691	28	2.4	30	90	4	110	52	1	1	45	1.18
15621--15698	29	2.7	28	80	9	86	50	1	1	47	1.17
16428--16481	16	3.6	16	73	19	62	50	0	0	50	1.00
16399--16497	28	3.4	29	87	5	146	48	1	0	50	1.07
21905--22049	75	1.9	75	86	4	204	35	19	23	22	1.96
25139--25174	17	2.1	17	100	0	72	16	16	38	27	1.90
38075--38116	22	1.9	22	95	0	75	40	0	7	52	1.29
40276--40393	45	2.6	45	79	0	119	27	18	29	24	1.98
40685--40751	19	3.5	19	81	0	80	40	2	22	34	1.69
70103--70136	15	2.3	15	89	0	50	50	32	2	14	1.58
70232--70284	21	2.6	20	84	3	70	22	20	20	35	1.96
71297--71348	25	2.2	24	90	10	81	30	0	5	63	1.18
77306--77381	11	6.9	11	73	0	71	26	30	19	23	1.98
77307--77381	22	3.4	22	81	0	87	25	30	20	24	1.98
77307--77392	22	3.9	23	74	8	72	24	29	20	25	1.99
78075--78104	14	2.1	15	93	6	53	50	33	6	10	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78196--78250	14	4.0	14	78	2	58	18	20	23	38	1.93
79249--79296	22	2.3	21	86	10	64	27	0	6	66	1.15
83564--83883	158	2.0	158	84	1	417	30	23	20	25	1.98
84357--84416	29	2.1	28	81	9	68	21	28	3	46	1.67
95037--95138	27	3.3	32	73	18	99	54	10	9	24	1.65
94998--95117	27	4.1	27	70	16	80	60	8	7	24	1.52
95023--95138	59	1.9	60	85	3	162	55	10	10	24	1.65
107810--107875	4	16.5	4	87	0	78	43	3	6	46	1.43
107810--107875	6	11.0	6	83	0	78	43	3	6	46	1.43
108789--108841	20	2.7	20	80	13	65	18	7	3	69	1.28
108794--108837	20	2.2	20	91	4	70	20	9	2	68	1.28
108814--108880	28	2.4	27	75	7	71	20	8	2	67	1.32
115802--115831	13	2.2	14	94	5	53	6	0	23	70	1.11
121948--122049	22	4.6	22	92	0	159	34	11	15	38	1.84
124998--125043	25	1.9	23	86	8	65	32	4	6	56	1.45
130292--130321	15	2.1	14	93	6	51	40	6	33	20	1.78
134653--134690	14	2.7	14	84	11	51	7	15	7	68	1.37
136501--136546	17	2.6	17	82	3	56	52	6	34	6	1.53
137654--137699	10	4.3	11	86	8	60	78	0	21	0	0.76
143888--143967	22	3.6	22	89	0	124	35	13	13	37	1.85
146398--146481	42	2.0	42	97	0	159	27	16	40	15	1.89
153512--153550	15	2.5	15	87	8	51	76	2	2	17	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
165722--165824	29	3.5	29	83	11	129	48	0	0	51	1.00
172115--172154	17	2.4	17	86	0	53	15	22	15	47	1.82
173224--173321	38	2.6	38	80	7	112	30	25	14	29	1.95
176295--176362	26	2.8	23	72	12	64	51	26	7	14	1.68
176637--176687	21	2.4	21	83	0	57	31	21	13	33	1.92
182855--182927	21	3.5	21	77	7	85	31	26	10	31	1.90
184013--184067	23	2.4	23	96	0	101	47	30	12	9	1.73
200038--200065	6	4.7	6	100	0	56	82	0	17	0	0.68
204919--204987	20	3.5	20	73	11	70	46	13	5	34	1.67
204911--204974	20	3.2	20	74	12	69	46	15	6	31	1.71
206208--206251	21	2.1	21	86	0	61	34	20	18	27	1.96
217192--217273	40	2.0	40	97	0	155	45	8	20	25	1.80
222821--222856	18	2.0	18	100	0	72	33	22	22	22	1.97
236753--236796	17	2.5	17	88	3	61	84	0	15	0	0.63
236753--236796	18	2.4	18	88	7	63	84	0	15	0	0.63
236753--236796	20	2.2	20	88	8	63	84	0	15	0	0.63
242914--242969	24	2.3	24	81	0	58	46	14	7	32	1.71
248331--248508	56	3.2	56	90	1	259	20	28	2	48	1.63
249582--249694	56	2.1	56	85	6	151	52	2	23	21	1.60
251252--251352	24	4.2	24	79	8	98	22	19	24	32	1.97
252546--252617	36	2.0	35	91	2	117	27	15	12	44	1.82
260731--260768	11	3.5	11	78	7	51	34	39	7	18	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
265119--265181	31	2.1	30	85	8	83	55	0	1	42	1.09
267668--267707	18	2.4	16	84	12	53	65	0	5	30	1.14
267666--267716	17	2.8	18	76	8	50	66	0	3	29	1.09
273128--273183	30	1.9	28	100	0	94	32	17	17	32	1.94
278554--278623	20	3.4	21	72	9	63	48	8	5	37	1.58
280279--280378	31	3.2	32	73	12	100	40	1	4	55	1.26
280289--280341	11	5.0	11	72	23	51	41	0	1	56	1.10
285258--285297	19	2.1	19	86	9	55	55	5	5	35	1.44
285380--285472	20	4.9	18	73	17	64	40	2	3	53	1.29
301694--301720	5	5.4	5	100	0	54	81	18	0	0	0.69
317234--317279	10	4.3	11	86	8	60	78	0	21	0	0.76
332226--332298	30	2.4	30	100	0	146	36	28	12	21	1.90
334038--334150	59	1.9	59	87	3	165	30	7	28	34	1.84
334038--334150	30	3.8	30	76	8	97	30	7	28	34	1.84
334038--334130	30	3.1	29	78	7	98	29	7	26	36	1.84
335853--336679	42	20.5	42	78	7	779	26	18	25	29	1.98
335853--336677	80	10.2	81	79	9	714	26	18	25	29	1.98
335955--336630	363	1.9	360	85	3	937	26	19	24	28	1.99
336909--337368	49	9.3	49	66	8	182	18	28	17	36	1.93
337011--337326	99	3.2	99	83	2	366	17	28	17	36	1.92
337011--337370	99	3.6	99	81	3	323	17	28	17	36	1.93
343420--343593	30	5.8	29	82	8	152	29	5	25	39	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
343446--343621	30	5.9	30	80	7	162	30	4	26	39	1.76
343405--343621	60	3.6	58	78	8	193	30	5	26	37	1.79
343570--343631	30	2.1	30	85	8	83	27	1	27	43	1.64
345756--345803	24	2.1	24	88	7	73	47	10	0	41	1.37
347594--347706	47	2.4	47	91	2	174	31	13	20	34	1.91
350935--350972	18	2.1	18	90	0	58	60	0	7	31	1.25
352781--352817	18	2.1	18	94	0	65	40	18	10	29	1.85
373394--373453	23	2.5	24	81	8	68	56	3	0	40	1.16
373394--373454	24	2.5	25	78	10	72	57	3	0	39	1.15
389985--390021	19	2.0	19	89	5	58	45	0	13	40	1.43
391372--391408	3	12.3	3	94	0	65	35	0	0	64	0.94
393600--393630	3	10.3	3	100	0	62	32	0	0	67	0.91
399177--399207	7	4.4	7	95	0	53	83	0	0	16	0.64
404781--404864	29	2.9	29	89	5	127	36	22	10	29	1.88
405031--405064	8	4.2	8	96	0	59	38	32	0	29	1.58
411866--411920	28	1.9	28	85	10	76	36	23	10	29	1.89
419613--420039	37	11.6	37	86	3	556	27	12	26	32	1.92
433007--433045	16	2.5	15	83	8	51	43	0	2	53	1.14
435541--435581	9	4.3	10	81	9	50	78	0	19	2	0.87
435533--435581	19	2.5	19	87	12	73	77	0	20	2	0.87
435567--435631	31	2.1	32	82	8	80	58	9	16	15	1.62
442750--442787	17	2.2	17	90	0	58	65	2	2	28	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
443110--443142	16	2.0	17	88	5	50	69	6	6	18	1.30
446043--446098	26	2.1	28	86	6	80	21	10	10	57	1.63
448604--448635	15	2.1	15	94	0	55	6	18	43	31	1.75
460257--460281	13	1.9	13	100	0	50	64	0	32	4	1.12
460256--460293	16	2.5	15	91	4	58	68	0	26	5	1.11
460739--460783	19	2.4	19	92	0	72	15	8	13	62	1.54
461365--461413	15	3.3	15	83	8	57	77	0	20	2	0.87
468908--468980	36	2.0	36	89	0	110	20	12	26	41	1.87
473782--473823	18	2.3	18	87	0	57	50	7	26	16	1.71
477567--477616	18	2.8	18	93	0	82	34	26	16	24	1.95

Tables:   1   2