genome.fa.s9767.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009767.1 Kokia drynarioides strain JFW-HI SEQ_124487, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  569295

Tables:   1   2   

This is table  2  of  2  ( 146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
477567--477622	18	3.1	18	89	0	67	33	28	16	21	1.95
488882--488930	23	2.1	23	100	0	98	24	0	30	44	1.54
509532--509576	18	2.5	19	85	10	67	57	11	26	4	1.52
509568--509606	18	2.2	18	90	0	60	48	2	33	15	1.58
515594--515713	24	5.0	24	79	4	116	23	20	20	36	1.95
515594--515715	48	2.5	48	84	2	138	23	19	19	36	1.95
516526--516670	48	3.0	48	89	0	209	40	22	7	30	1.81
516596--516670	21	3.3	21	71	20	69	40	22	10	26	1.87
516638--516670	11	3.1	11	86	8	50	39	24	12	24	1.89
522028--522094	24	2.8	25	80	8	77	22	19	22	35	1.96
525465--525530	21	3.2	20	86	4	69	30	27	15	27	1.96
525472--525547	21	3.7	20	82	3	62	27	28	14	28	1.95
541486--541562	31	2.5	31	93	0	127	23	27	25	23	2.00
541850--541895	19	2.3	20	82	14	60	36	0	19	43	1.51
541938--542239	151	2.0	151	94	0	532	26	20	18	34	1.95
543706--543787	30	2.8	30	84	1	112	35	24	17	23	1.95
543915--543993	30	2.6	30	84	4	88	46	20	11	21	1.81
544950--545019	20	3.4	20	82	4	77	50	10	7	32	1.63
546134--546214	27	3.0	27	85	0	99	33	20	18	27	1.96
552988--553049	10	6.6	10	74	22	55	70	1	0	27	0.96
558797--558829	2	16.0	2	93	6	57	48	0	3	48	1.17
564798--564823	8	3.2	8	100	0	52	76	11	0	11	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
566656--566847	96	2.0	96	82	8	230	36	14	20	28	1.91
567073--567622	59	9.4	59	82	6	548	33	4	29	31	1.79
567076--567624	29	18.7	29	72	14	313	33	4	29	32	1.78
568554--568606	18	3.0	17	81	15	63	32	0	3	64	1.12

Tables:   1   2

The End!