genome.fa.s9936.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009936.1 Kokia drynarioides strain JFW-HI SEQ_124677, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  125212

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1476--1612	45	3.0	45	89	6	206	18	21	29	30	1.97
3814--3856	21	2.1	21	86	4	61	58	13	2	25	1.48
4239--4273	12	2.8	12	91	8	52	0	20	0	80	0.72
17122--17181	24	2.6	23	78	2	66	43	16	11	28	1.83
20168--20197	15	2.0	15	93	0	51	23	0	0	76	0.78
20169--20199	16	1.9	16	93	0	53	22	0	0	77	0.77
23071--23140	29	2.4	29	78	7	70	25	7	30	37	1.83
23182--23322	29	4.7	30	78	8	146	39	4	24	31	1.75
23193--23344	59	2.6	60	81	5	177	38	5	24	31	1.79
23193--23343	29	5.1	29	74	8	83	38	5	24	31	1.79
23778--23941	81	2.0	81	82	8	201	21	23	8	46	1.79
25167--25260	17	5.5	17	76	3	91	56	6	1	36	1.32
25173--25237	33	1.9	34	90	3	105	55	7	0	36	1.29
25170--25260	34	2.7	33	81	5	103	57	6	1	35	1.32
25842--25938	37	2.6	37	98	0	185	25	24	19	29	1.98
26091--26307	39	5.6	39	73	9	156	22	17	32	27	1.97
26128--26388	117	2.2	117	87	1	380	23	18	30	27	1.97
26631--27295	49	13.6	49	69	14	336	18	23	17	39	1.92
26617--27338	98	7.4	98	86	3	754	19	22	17	40	1.92
26920--27375	147	3.1	142	72	12	352	20	23	17	39	1.92
28305--28393	7	12.9	7	67	11	58	2	20	1	75	0.97
28328--28363	13	2.6	14	86	8	56	0	22	0	77	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28338--28417	21	3.9	20	77	8	72	5	17	0	76	0.95
33557--33836	29	9.6	29	75	10	164	37	2	23	36	1.70
33545--33776	58	4.0	58	78	11	183	36	2	24	37	1.68
33579--33831	59	4.3	59	83	8	227	38	2	23	35	1.68
33607--33836	88	2.6	88	84	6	261	39	2	22	35	1.68
35645--35728	17	5.0	16	73	9	60	51	7	2	39	1.42
35655--35730	34	2.2	33	81	9	91	52	7	2	36	1.45
41681--41706	3	8.7	3	100	0	52	34	65	0	0	0.93
46353--46398	25	1.9	25	86	8	69	32	4	6	56	1.45
51848--51925	23	3.3	23	94	3	129	11	23	23	42	1.86
51848--51953	23	4.4	25	84	10	125	12	23	22	41	1.87
67913--67972	23	2.5	25	89	10	106	10	21	25	43	1.83
67892--67970	23	3.3	23	85	13	99	11	25	22	40	1.87
67892--68018	48	2.7	48	81	11	122	11	25	22	40	1.87
68937--68984	20	2.5	20	83	13	64	77	0	12	10	1.00
68937--68992	20	3.1	18	80	16	62	78	0	12	8	0.96
70018--70063	25	1.9	25	86	8	69	32	4	6	56	1.45
72711--72742	15	2.1	16	94	5	57	71	3	0	25	1.00
79408--79460	26	2.0	26	100	0	106	35	7	7	49	1.60
82450--82525	37	2.1	37	100	0	152	42	10	10	36	1.74
93917--93959	21	2.0	22	90	4	70	48	0	0	51	1.00
94901--94943	22	2.0	22	90	4	70	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104646--105432	261	3.0	261	96	0	1468	31	16	17	34	1.92
109100--109155	18	3.2	17	74	2	58	30	25	25	19	1.98
110296--110320	2	12.5	2	100	0	50	48	0	0	52	1.00
110592--110748	60	2.6	59	84	5	215	25	17	10	46	1.80
110914--111059	59	2.4	60	79	6	152	47	15	15	22	1.82
114887--114926	16	2.4	17	91	4	64	72	0	0	27	0.85
116321--116486	86	1.9	87	90	4	264	37	15	15	32	1.88
116414--116607	61	3.2	60	82	6	232	30	19	17	32	1.95
116625--116751	44	2.9	42	80	10	128	32	20	12	34	1.90
116720--116914	61	3.2	60	86	5	250	27	18	19	34	1.96
117712--117781	30	2.3	30	82	0	77	60	2	10	27	1.43
120178--120644	86	5.5	86	93	2	689	48	4	5	41	1.48
120758--120805	12	3.7	12	77	20	51	41	10	0	47	1.37
120768--120802	17	2.1	16	89	5	52	48	8	0	42	1.33
120758--120815	28	2.1	28	83	0	71	43	12	0	44	1.41
123080--125212	481	4.4	482	95	0	3869	28	21	16	32	1.95
123083--125208	963	2.2	963	96	0	3884	28	21	16	33	1.95

Tables:   1

The End!