Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: Ga08g02617.F1
Parameters: 2 7 7 80 10 50 1000
Length: 1694
Tables: 1
This is table 1 of 1 ( 13 repeats found )
Click on indices to view alignment
Table Explanation
| Indices | Period Size | Copy Number | Consensus Size | Percent Matches | Percent Indels | Score | A | C | G | T | Entropy (0-2) |
| 200--543 | 72 | 4.8 | 72 | 92 | 1 | 530 | 25 | 37 | 14 | 22 | 1.93 |
| 213--774 | 144 | 3.8 | 145 | 86 | 7 | 770 | 24 | 37 | 14 | 23 | 1.92 |
| 546--774 | 72 | 3.2 | 72 | 92 | 0 | 359 | 22 | 37 | 15 | 24 | 1.92 |
| 315--954 | 231 | 2.7 | 235 | 87 | 5 | 874 | 23 | 38 | 14 | 23 | 1.91 |
| 459--630 | 87 | 2.0 | 87 | 95 | 0 | 308 | 21 | 37 | 14 | 26 | 1.92 |
| 387--702 | 159 | 2.0 | 159 | 91 | 0 | 515 | 22 | 37 | 15 | 24 | 1.93 |
| 782--819 | 15 | 2.5 | 15 | 91 | 0 | 58 | 10 | 42 | 15 | 31 | 1.81 |
| 684--882 | 108 | 1.8 | 108 | 93 | 0 | 344 | 22 | 40 | 14 | 22 | 1.90 |
| 623--1062 | 180 | 2.4 | 180 | 95 | 0 | 781 | 23 | 40 | 14 | 21 | 1.90 |
| 797--954 | 72 | 2.2 | 72 | 95 | 0 | 289 | 24 | 39 | 13 | 21 | 1.90 |
| 939--981 | 21 | 2.0 | 21 | 90 | 0 | 68 | 16 | 46 | 16 | 20 | 1.84 |
| 962--1004 | 15 | 2.9 | 15 | 85 | 0 | 59 | 16 | 39 | 16 | 27 | 1.90 |
| 869--1097 | 108 | 2.1 | 108 | 91 | 0 | 368 | 22 | 41 | 14 | 21 | 1.90 |
Tables: 1
The End!