isoform.fa.s93594.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Ga14g01673.P2
Parameters: 2 7 7 80 10 50 1000
Length:  49271

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3272--3325	24	2.2	24	86	0	72	12	40	31	14	1.84
3359--3479	58	2.1	59	92	1	199	30	23	21	23	1.99
3873--3950	24	3.2	24	96	0	138	7	41	35	15	1.76
4137--4835	42	16.5	42	85	5	815	14	32	34	18	1.91
4162--4839	85	8.0	84	86	5	820	14	33	34	17	1.91
11963--12317	179	2.0	177	87	4	507	19	27	27	25	1.99
12676--12729	24	2.2	24	86	0	72	12	40	31	14	1.84
12763--12883	58	2.1	59	92	1	199	30	23	21	23	1.99
13280--13354	24	3.2	24	90	7	120	6	42	37	13	1.70
13541--14226	42	16.5	43	86	6	852	14	33	34	17	1.90
13541--14226	85	8.2	85	87	6	844	14	33	34	17	1.90
13713--14262	43	13.2	43	83	8	338	13	32	35	17	1.90
22072--22125	24	2.2	24	86	0	72	12	40	31	14	1.84
22159--22279	58	2.1	59	92	1	199	30	23	21	23	1.99
22676--22753	24	3.2	24	96	0	138	7	41	35	15	1.76
22940--23639	85	8.2	85	86	5	861	14	32	34	18	1.91
22940--23639	42	16.5	42	86	5	833	14	32	34	18	1.91
31485--31538	24	2.2	24	86	0	72	12	40	31	14	1.84
31572--31692	58	2.1	59	92	1	199	30	23	21	23	1.99
32089--32166	24	3.2	24	96	0	138	7	41	35	15	1.76
32353--33052	85	8.2	85	86	5	861	14	32	34	18	1.91
32353--33052	42	16.5	42	86	5	833	14	32	34	18	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40898--40951	24	2.2	24	86	0	72	12	40	31	14	1.84
40985--41105	58	2.1	59	92	1	199	30	23	21	23	1.99
41502--41579	24	3.2	24	96	0	138	7	41	35	15	1.76
41766--42465	85	8.2	85	86	5	861	14	32	34	18	1.91
41766--42465	42	16.5	42	86	5	833	14	32	34	18	1.91

Tables:   1

The End!