genome.fa.s1079.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1079
Parameters: 2 7 7 80 10 50 1000
Length:  410574

Tables:   1   2   3   

This is table  3  of  3  ( 339 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
304994--305144	79	1.9	80	86	1	214	34	14	23	27	1.94
307559--307607	21	2.4	21	90	6	75	30	16	12	40	1.85
309452--309512	10	5.8	11	75	7	56	85	13	0	1	0.68
309457--309512	8	6.9	8	80	11	69	85	12	0	1	0.67
309457--309510	15	3.5	15	84	5	72	85	12	0	1	0.69
309454--309510	23	2.5	22	86	11	78	85	12	0	1	0.66
310818--310889	28	2.6	28	84	2	92	25	26	20	27	1.99
311061--311359	32	9.4	32	82	6	360	29	31	17	21	1.96
311061--311353	63	4.6	62	83	7	365	29	31	17	21	1.96
311071--311359	95	3.0	94	84	4	382	30	31	17	20	1.96
311061--311363	127	2.4	128	85	4	441	29	31	17	21	1.96
311426--311934	52	9.8	51	70	12	182	25	25	14	34	1.94
311537--311982	52	8.5	51	72	9	227	25	26	14	33	1.94
311486--311726	104	2.4	101	81	6	277	26	25	15	32	1.95
311522--311891	104	3.5	102	77	10	298	25	25	14	34	1.94
312645--312698	19	2.7	21	86	13	87	37	11	12	38	1.79
318499--318524	13	2.0	13	100	0	52	38	15	15	30	1.88
320737--320781	21	2.1	21	84	8	56	53	4	20	22	1.63
324572--324622	13	3.9	13	97	0	93	31	17	15	35	1.92
327069--327142	20	3.7	20	81	3	103	35	13	20	31	1.91
327087--327162	21	3.7	21	82	3	109	40	11	18	28	1.86
327069--327162	41	2.3	41	100	0	188	38	12	19	29	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
327201--327226	13	2.0	13	100	0	52	38	15	15	30	1.88
334861--334982	51	2.4	50	90	2	181	41	11	18	28	1.85
334948--335002	20	2.8	20	82	0	74	43	12	10	32	1.78
340034--340063	15	1.9	16	93	6	53	33	23	23	20	1.97
341359--341456	18	5.5	17	77	16	83	82	5	2	10	0.90
341361--341431	24	2.9	24	81	8	65	84	5	2	7	0.85
341411--341457	4	13.0	4	78	17	50	80	2	0	17	0.80
341388--341457	32	2.2	32	85	7	90	81	4	1	12	0.90
341369--341456	14	6.3	14	76	16	67	82	5	1	10	0.87
341673--341792	58	2.1	57	93	4	206	35	21	19	23	1.96
342327--342532	42	4.9	42	69	10	114	23	31	10	33	1.89
342331--343184	85	10.0	85	79	4	691	21	31	13	34	1.91
342504--342634	43	3.1	43	70	14	126	22	35	11	31	1.89
342395--342615	43	5.2	42	67	16	114	24	32	10	32	1.89
342331--343184	256	3.3	254	80	5	824	21	31	13	34	1.91
342771--342913	42	3.4	42	68	14	114	20	34	11	33	1.89
342331--343184	341	2.5	340	78	4	896	21	31	13	34	1.91
343136--343244	44	2.5	44	84	1	139	15	28	13	42	1.85
343367--343452	41	2.1	42	84	6	113	17	25	13	43	1.86
344724--345114	165	2.5	150	77	15	421	32	10	6	50	1.63
344797--345297	165	3.0	165	85	8	641	30	10	7	51	1.65
345602--345650	10	4.7	10	82	7	53	77	0	18	4	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
345604--345640	10	3.4	11	92	7	58	83	0	16	0	0.64
345604--345640	13	3.0	13	88	7	51	83	0	16	0	0.64
347444--347469	13	2.0	13	100	0	52	38	15	15	30	1.88
347530--347581	21	2.5	21	87	9	72	26	17	15	40	1.89
348179--348224	3	15.3	3	95	0	83	65	0	0	34	0.93
351065--351117	20	2.7	20	91	2	81	28	11	22	37	1.89
353198--353240	20	2.0	22	86	8	63	4	30	46	18	1.69
353730--353784	20	2.8	20	100	0	110	34	14	14	36	1.87
354444--354469	13	2.0	13	100	0	52	38	15	15	30	1.88
356688--356732	21	2.1	21	84	8	56	53	4	20	22	1.63
358536--358566	15	2.1	15	93	0	53	48	16	22	12	1.80
360622--360660	20	2.0	20	94	0	69	23	15	10	51	1.73
360646--360684	13	3.0	13	96	0	69	30	17	15	35	1.91
360805--360851	21	2.3	21	79	20	55	34	19	4	42	1.70
360807--360849	20	2.2	19	84	16	52	32	18	4	44	1.71
369762--369829	33	2.1	32	86	2	91	33	13	16	36	1.87
369843--369875	11	3.0	11	95	0	57	30	36	15	18	1.91
370563--370629	3	22.3	3	93	0	116	64	0	1	34	1.03
373414--373467	20	2.7	20	94	2	90	40	5	16	37	1.72
373524--373714	51	3.7	50	82	4	220	28	16	12	42	1.84
373524--373714	103	1.9	103	82	2	240	28	16	12	42	1.84
376053--376125	27	2.7	27	81	6	85	24	30	17	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
384562--384767	79	2.6	78	82	2	234	29	16	29	24	1.96
384719--384794	27	2.8	28	87	2	100	21	19	34	25	1.96
384778--385153	51	7.4	51	73	10	268	32	11	25	31	1.91
384774--384999	103	2.2	104	81	4	269	32	11	25	30	1.91
385010--385042	17	1.9	17	100	0	66	18	18	36	27	1.94
384668--385158	253	1.9	256	90	5	783	31	12	26	29	1.93
387521--387546	13	2.0	13	100	0	52	38	15	15	30	1.88
387500--387566	33	2.0	33	88	0	98	43	16	14	25	1.86
387584--387655	19	4.2	17	74	25	80	38	12	11	37	1.79
387608--387632	13	1.9	13	100	0	50	32	16	16	36	1.90
387589--387651	32	2.0	32	93	0	108	36	14	12	36	1.84
387709--387761	21	2.5	21	87	0	79	39	16	11	32	1.85
389020--389045	13	2.0	13	100	0	52	69	7	23	0	1.14
389624--389657	13	2.5	13	85	4	50	88	0	11	0	0.52
390022--390070	17	2.9	17	77	17	57	75	4	12	8	1.16
389980--390077	50	2.0	48	84	11	128	74	3	14	8	1.17
391776--392094	164	1.9	168	86	3	457	29	28	14	28	1.95
392454--392606	44	3.4	43	68	9	108	16	19	16	46	1.84
392453--392628	91	1.9	91	82	0	217	17	20	17	44	1.86
392578--392680	46	2.2	45	76	6	107	19	22	16	41	1.90
393872--393936	33	2.0	32	85	8	87	32	15	15	36	1.89
394006--394057	24	2.2	24	92	0	86	25	28	7	38	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
394514--394603	36	2.6	36	80	16	111	31	13	24	31	1.93
399702--400034	155	2.1	156	80	4	377	40	18	12	28	1.87
399729--400078	155	2.2	156	80	3	348	38	19	13	28	1.90
400893--400927	17	2.0	18	88	5	54	14	2	11	71	1.25
402176--402200	13	1.9	13	100	0	50	36	16	16	32	1.90
402153--402218	33	2.0	32	88	2	96	30	15	18	36	1.91
402275--402336	20	3.5	20	71	28	75	32	19	17	30	1.95
402292--402316	13	1.9	13	100	0	50	36	16	16	32	1.90
402275--402339	33	2.0	33	100	0	130	33	18	16	30	1.94
404783--404821	13	3.0	13	88	0	60	35	12	17	33	1.88
406889--406918	15	2.0	15	93	0	51	13	20	16	50	1.78

Tables:   1   2   3

The End!