genome.fa.s111.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold111
Parameters: 2 7 7 80 10 50 1000
Length:  1194829

Tables:   1   2   3   4   5   6   

This is table  5  of  6  ( 716 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
605353--605383	15	2.1	15	93	0	53	12	22	16	48	1.80
607186--607230	21	2.1	21	84	8	56	22	20	4	53	1.63
610337--610361	3	8.3	3	100	0	50	32	36	0	32	1.58
612674--612699	13	2.0	13	100	0	52	30	15	15	38	1.88
613082--613126	13	3.8	13	72	27	55	35	17	13	33	1.89
613082--613147	33	2.0	34	88	8	100	33	19	13	33	1.91
613176--613231	19	2.9	19	91	2	85	33	17	17	30	1.94
623614--623806	101	1.9	101	100	0	386	34	19	23	22	1.97
625179--625250	20	3.6	20	76	0	90	40	13	12	33	1.83
630748--630773	13	2.0	13	100	0	52	46	7	0	46	1.31
630740--630774	17	2.1	17	94	0	61	48	8	0	42	1.33
633501--633534	15	2.3	15	89	0	50	79	17	0	2	0.86
633488--633537	21	2.4	21	79	0	64	80	14	0	6	0.90
633513--633568	17	3.2	17	76	14	51	83	7	7	1	0.86
635166--635199	17	1.9	18	94	5	61	44	0	0	55	0.99
634773--635676	467	1.9	467	99	0	1799	37	11	10	40	1.75
635633--635666	17	1.9	18	94	5	61	44	0	0	55	0.99
637809--637863	20	2.7	21	77	11	60	32	16	12	38	1.86
638491--638592	52	2.0	52	84	7	136	39	25	2	32	1.71
640437--640465	13	2.2	13	100	0	58	41	17	13	27	1.87
641597--641622	13	2.0	13	100	0	52	38	15	15	30	1.88
643848--643892	21	2.1	21	84	8	56	53	4	20	22	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
647805--647830	13	2.0	13	100	0	52	30	15	15	38	1.88
650373--650398	13	2.0	13	100	0	52	38	15	15	30	1.88
657703--657934	107	2.2	106	81	3	259	29	15	27	27	1.96
657813--658009	82	2.4	81	81	6	231	34	15	23	26	1.94
657972--658042	28	2.5	30	82	13	96	26	18	29	25	1.98
659891--659963	20	3.6	20	79	3	92	36	13	17	31	1.89
659909--659984	21	3.7	21	80	3	100	42	11	17	28	1.84
659891--659984	41	2.3	41	96	0	170	40	12	17	29	1.86
660023--660048	13	2.0	13	100	0	52	38	15	15	30	1.88
664110--664140	15	2.1	15	93	0	53	48	16	22	12	1.80
666201--666239	13	3.0	13	96	0	69	30	17	15	35	1.91
668613--668685	20	3.6	20	81	3	101	35	13	19	31	1.91
668631--668706	21	3.7	21	80	3	100	42	11	17	28	1.84
668613--668706	41	2.3	41	98	0	179	39	12	18	29	1.88
668745--668770	13	2.0	13	100	0	52	38	15	15	30	1.88
670320--670394	20	3.8	19	85	7	96	42	13	14	29	1.84
670410--670439	13	2.3	13	100	0	60	40	6	16	36	1.75
670637--670833	55	3.5	55	86	6	268	24	20	26	27	1.99
670730--670811	27	3.0	27	60	3	65	24	21	25	28	1.99
670840--671029	61	3.1	61	90	1	283	27	18	29	23	1.98
670645--671243	216	2.8	215	90	3	910	26	19	28	26	1.99
670902--671184	155	1.8	155	91	0	467	27	19	28	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
671071--671304	61	3.9	61	88	2	328	28	19	25	26	1.99
671077--671304	120	1.9	121	89	1	359	28	18	26	26	1.98
670840--671767	275	3.3	277	88	5	1251	26	19	28	25	1.99
671118--671683	214	2.6	216	83	8	650	26	19	27	25	1.99
671346--671771	55	7.4	56	88	6	508	24	20	28	26	1.99
671649--671740	29	3.3	29	65	25	79	20	20	31	27	1.98
672759--672841	11	7.5	11	81	10	98	0	1	13	85	0.66
672770--672842	7	10.7	7	80	19	84	0	1	13	84	0.68
672751--672820	32	2.2	32	92	0	113	0	2	11	85	0.69
672767--672831	20	3.3	20	87	6	98	0	0	13	86	0.58
672759--672832	32	2.3	32	88	6	116	0	0	13	86	0.57
672759--672833	1	75.0	1	72	0	60	0	0	13	86	0.57
681729--681796	19	3.9	19	78	21	85	35	11	14	38	1.83
681731--681793	32	2.0	32	96	0	117	34	12	15	36	1.86
681750--681774	13	1.9	13	100	0	50	36	16	16	32	1.90
684331--684399	27	2.5	27	88	2	93	24	31	21	21	1.98
684217--684555	52	6.5	51	69	16	176	29	26	12	31	1.93
684539--684615	28	2.8	28	87	0	100	23	33	19	23	1.97
684217--684622	212	1.9	212	90	3	647	28	27	13	30	1.94
684277--684694	107	3.9	107	73	9	314	27	27	14	29	1.95
697084--697144	12	5.5	11	78	9	54	85	6	8	0	0.75
698107--698989	55	16.0	54	89	5	1249	28	29	20	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
698162--698247	27	3.1	27	62	15	68	27	30	18	23	1.98
699611--699636	13	2.0	13	100	0	52	30	15	15	38	1.88
699591--699657	33	2.0	33	88	0	98	25	14	16	43	1.86
701987--702328	52	6.5	53	71	17	223	29	26	12	31	1.93
702104--702172	27	2.5	27	88	2	93	24	31	21	21	1.98
702312--702388	28	2.8	28	87	0	100	23	33	19	23	1.97
701990--702395	212	1.9	212	90	3	656	27	27	13	30	1.94
702050--702467	107	3.9	107	73	9	314	27	27	14	29	1.95
714164--714250	1	87.0	1	80	0	93	89	4	5	0	0.58
714165--714244	37	2.3	37	87	8	114	90	5	5	0	0.57
714164--714250	35	2.6	33	85	5	111	89	4	5	0	0.58
987675--987700	13	2.0	13	100	0	52	30	15	15	38	1.88
987759--987830	20	3.5	20	81	3	99	30	19	13	36	1.91
987739--987830	41	2.3	40	96	3	168	29	18	13	39	1.88
988445--988477	16	2.1	16	88	11	50	39	36	0	24	1.56
990276--990314	13	3.0	13	96	0	69	35	15	17	30	1.91
990300--990338	20	2.0	20	94	0	69	51	10	15	23	1.73
992397--992427	15	2.1	15	93	0	53	12	22	16	48	1.80
996489--996514	13	2.0	13	100	0	52	30	15	15	38	1.88
996553--996628	21	3.7	21	80	3	100	28	17	11	42	1.84
996574--996646	20	3.6	20	81	3	101	31	19	13	35	1.91
996553--996646	41	2.3	41	98	0	179	29	18	12	39	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1003025--1003077	18	2.9	18	80	11	63	83	7	7	1	0.89
1004060--1004538	55	8.3	57	84	9	523	26	28	21	23	1.99
1005397--1005422	13	2.0	13	100	0	52	30	15	15	38	1.88
1007787--1008175	51	7.4	51	74	12	297	29	26	12	31	1.93
1007895--1007969	27	2.7	28	89	2	107	24	34	20	21	1.96
1007787--1008175	52	7.4	50	71	15	234	29	26	12	31	1.93
1008158--1008234	28	2.8	28	86	7	95	22	33	19	24	1.97
1007785--1008285	264	1.9	262	90	1	788	28	27	13	31	1.94
1012866--1012920	20	2.6	21	86	13	78	38	12	18	30	1.88
1012865--1012943	20	3.8	20	75	16	72	36	12	15	35	1.85
1017405--1017440	15	2.4	15	90	0	54	55	2	11	30	1.49
1019338--1019371	10	3.3	10	95	4	59	41	20	0	38	1.53
1021734--1021785	19	2.7	20	84	3	70	28	13	15	42	1.85
1021833--1021919	20	4.7	20	74	18	80	33	13	18	34	1.90
1021850--1021879	13	2.3	13	94	0	51	33	20	10	36	1.86
1021833--1021899	33	2.0	33	94	0	116	29	14	19	35	1.92
1023177--1023252	20	3.8	20	75	15	84	36	14	18	30	1.91
1023290--1023341	20	2.5	21	84	3	61	30	13	15	40	1.86
1024431--1024854	79	5.4	78	79	7	398	36	8	23	31	1.85
1024431--1024854	157	2.8	152	79	4	440	36	8	23	31	1.85
1027206--1027270	34	1.9	34	90	0	103	43	7	16	32	1.77
1037892--1037917	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1039736--1039810	22	3.5	21	91	8	116	37	9	21	32	1.85
1039764--1039915	52	2.9	52	88	4	211	40	6	21	32	1.79
1040746--1040801	20	2.8	20	91	0	85	32	16	12	39	1.85
1040748--1040831	20	4.6	20	71	19	65	28	16	13	41	1.86
1043134--1043267	52	2.6	51	83	4	171	30	26	10	32	1.90
1043276--1044044	79	9.7	79	89	1	1042	27	25	14	32	1.95
1056467--1056516	22	2.3	22	79	6	57	84	10	2	4	0.84
1056468--1056516	21	2.3	22	85	3	64	83	10	2	4	0.85
1057488--1057642	60	2.6	59	86	7	213	25	29	18	27	1.98
1057652--1058067	55	7.4	56	86	6	547	26	26	21	24	1.99

Tables:   1   2   3   4   5   6