genome.fa.s1224.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1224
Parameters: 2 7 7 80 10 50 1000
Length:  474570

Tables:   1   2   3   

This is table  3  of  3  ( 353 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
318286--318575	132	2.2	132	79	4	298	16	23	14	45	1.85
318346--318678	66	5.1	66	75	6	221	16	22	15	45	1.85
319371--319771	66	6.1	66	73	4	272	17	20	14	47	1.82
319815--319968	66	2.3	65	77	10	150	16	22	15	45	1.85
319850--320013	66	2.5	66	81	2	177	15	22	16	45	1.84
320414--320568	65	2.4	65	80	3	150	16	22	15	45	1.84
320862--321075	65	3.3	65	80	3	198	18	23	14	44	1.86
321528--321844	66	4.8	66	72	5	205	15	19	17	47	1.82
321861--321988	65	2.0	65	82	3	159	17	20	14	47	1.82
321905--322175	65	4.2	64	78	8	239	16	21	14	48	1.81
322074--322215	66	2.2	66	82	6	164	16	25	13	44	1.84
322258--322450	64	3.0	64	81	3	190	16	21	15	47	1.83
322258--322450	65	3.0	64	83	3	208	16	21	15	47	1.83
322281--322474	64	3.0	64	82	3	201	17	23	14	44	1.85
321964--322514	282	2.0	282	94	0	958	16	22	13	47	1.81
322742--323125	66	5.9	66	73	7	214	20	21	13	45	1.85
322931--323138	66	3.2	65	81	5	238	15	21	15	47	1.82
322955--323286	185	1.8	183	82	6	429	15	21	15	46	1.83
323021--323235	118	1.8	119	82	4	272	14	22	16	46	1.84
323296--323490	66	2.9	66	78	2	167	16	23	13	46	1.83
323655--323702	17	2.9	17	82	11	55	56	4	0	39	1.19
324314--324357	20	2.1	20	83	8	52	29	18	6	45	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
326640--326797	51	3.1	50	79	10	187	32	23	10	34	1.88
326743--326987	79	3.1	79	81	1	276	28	26	12	32	1.93
331753--331812	32	1.9	31	83	10	77	76	6	11	5	1.13
333111--334876	62	28.9	62	85	3	2230	23	25	20	30	1.98
333111--334876	61	28.9	61	85	4	2100	23	25	20	30	1.98
334854--335070	43	5.1	41	77	9	195	21	24	11	42	1.86
334854--335057	41	4.9	39	75	11	156	22	24	12	40	1.89
334931--335039	40	2.6	41	78	8	112	20	24	10	44	1.82
335737--335883	49	2.9	50	77	7	138	27	15	12	43	1.84
338111--338283	78	2.2	79	84	3	224	28	26	13	31	1.94
338217--338332	51	2.3	51	84	0	151	31	27	11	30	1.91
338267--338438	78	2.2	79	84	3	213	28	26	12	32	1.93
338138--338381	129	1.9	129	83	3	321	29	25	11	32	1.92
340450--340482	16	2.0	17	88	5	50	24	33	3	39	1.71
349784--349809	8	3.2	8	100	0	52	53	11	11	23	1.69
350632--350681	21	2.3	20	81	18	57	20	2	8	70	1.23
350503--350715	111	2.0	107	93	3	363	27	7	7	57	1.54
350521--350747	111	2.0	111	85	1	303	30	7	7	54	1.56
353466--353528	19	3.7	18	72	24	64	33	12	15	38	1.86
353466--353536	32	2.2	32	89	0	115	32	12	16	38	1.87
353581--353607	13	2.1	13	100	0	54	29	14	14	40	1.86
358659--358783	20	5.8	20	73	17	106	30	17	11	40	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
364581--364606	13	2.0	13	100	0	52	30	15	15	38	1.88
364561--364624	32	2.0	33	90	3	103	28	14	15	42	1.86
365266--365301	18	2.0	18	100	0	72	38	16	5	38	1.72
367182--367219	13	2.9	13	92	0	58	34	15	15	34	1.90
369285--369322	15	2.5	15	91	0	58	13	21	15	50	1.78
373379--373430	19	2.7	20	87	6	79	28	13	15	42	1.85
375460--375531	22	3.2	23	70	16	62	69	6	13	9	1.36
376824--376932	27	4.0	27	90	2	164	23	31	13	31	1.94
376819--377489	28	23.1	28	82	7	424	28	28	17	24	1.97
376819--376931	55	2.1	55	93	0	190	23	30	13	31	1.93
376819--376958	55	2.6	55	86	1	147	25	29	14	31	1.94
376960--377273	32	10.3	32	84	7	370	31	30	18	19	1.96
377594--377725	48	2.8	48	88	0	192	18	25	18	37	1.94
383567--384860	429	3.0	429	95	0	2309	28	22	20	28	1.98
384913--385189	97	2.8	95	80	9	317	27	22	12	37	1.91
389248--389272	13	1.9	13	100	0	50	32	16	16	36	1.90
398070--398094	13	1.9	13	100	0	50	32	16	16	36	1.90
398194--398219	13	2.0	13	100	0	52	30	15	15	38	1.88
398174--398241	33	2.1	32	91	8	111	35	16	16	32	1.91
400203--400392	79	2.4	77	81	7	222	33	14	24	27	1.94
400327--400442	51	2.3	50	84	3	142	32	14	25	27	1.95
400287--400522	130	1.8	130	85	1	339	36	13	22	27	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
400378--400897	79	6.6	78	78	9	457	35	12	22	29	1.91
400409--400897	157	3.1	154	82	6	529	35	12	22	29	1.90
400378--400897	236	2.2	236	84	6	687	35	12	22	29	1.91
403867--403961	41	2.3	41	90	1	154	37	15	22	24	1.93
403841--403961	42	2.9	42	86	2	163	42	12	22	22	1.86
403950--404428	61	8.0	60	83	8	484	29	18	24	26	1.98
403970--404456	60	8.1	61	84	5	609	29	19	25	25	1.98
403942--404448	121	4.2	120	84	6	609	29	19	25	26	1.99
405447--405483	11	3.3	11	88	3	56	0	0	13	86	0.57
417711--417900	79	2.4	79	81	5	231	31	10	25	32	1.90
417834--417950	50	2.3	51	91	1	182	29	11	30	29	1.91
417755--417992	129	1.8	130	84	4	329	31	10	26	31	1.90
417755--418029	129	2.1	129	82	4	322	33	10	25	30	1.90
417886--418263	79	4.8	79	80	2	352	33	12	24	29	1.92
417731--418108	208	1.8	208	82	4	494	33	11	24	30	1.91
417886--418263	158	2.4	157	84	4	474	33	12	24	29	1.92
422632--422933	164	1.8	165	83	7	400	41	14	9	34	1.78
425353--425653	134	2.2	135	86	6	423	33	20	16	28	1.95
429087--429142	2	28.0	2	81	0	67	46	3	5	44	1.43
429617--429655	20	2.0	20	100	0	78	38	15	0	46	1.46
432105--432309	92	2.3	92	84	6	258	28	14	12	44	1.81
434745--435171	166	2.6	166	81	4	484	32	9	7	51	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
435523--435556	8	4.1	8	88	3	50	82	0	11	5	0.83
437824--437849	13	2.0	13	100	0	52	30	15	15	38	1.88
438556--438599	21	2.1	21	83	8	54	25	31	4	38	1.76
440402--440438	13	2.8	13	100	0	74	40	16	13	29	1.86
440424--440502	20	3.7	20	78	15	77	44	15	15	25	1.85
442510--442547	15	2.5	15	91	0	58	13	21	15	50	1.78
444351--444395	21	2.1	21	84	8	56	22	20	4	53	1.63
446611--446636	13	2.0	13	100	0	52	30	15	15	38	1.88
447103--447127	13	1.9	13	100	0	50	36	16	16	32	1.90
447083--447149	33	2.0	33	88	0	98	32	11	14	40	1.83
447190--447214	13	1.9	13	100	0	50	32	16	16	36	1.90
447223--447343	52	2.3	52	97	0	224	34	18	18	28	1.94
450408--451050	156	4.1	151	77	7	585	25	17	18	37	1.93
451013--451086	36	2.1	36	100	0	148	25	16	10	47	1.79
459697--459774	41	1.9	41	91	0	129	29	8	7	53	1.60
461118--461143	13	2.0	13	100	0	52	38	15	15	30	1.88
463358--463402	21	2.1	21	84	8	56	53	4	20	22	1.63
465206--465244	15	2.6	15	91	0	60	51	15	20	12	1.76
467448--467493	21	2.2	20	81	11	58	32	19	4	43	1.71
469085--469140	29	1.9	29	92	0	94	33	5	30	30	1.80
469087--469148	29	2.1	29	81	0	70	37	6	25	30	1.81
469796--469821	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
471552--471603	20	2.6	19	84	9	59	51	0	0	48	1.00
471789--471815	2	13.5	2	100	0	54	0	48	0	51	1.00
472829--472853	2	12.5	2	100	0	50	52	0	0	48	1.00

Tables:   1   2   3

The End!