genome.fa.s131.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold131
Parameters: 2 7 7 80 10 50 1000
Length:  442253

Tables:   1   2   3   

This is table  3  of  3  ( 340 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
279756--279796	21	2.0	20	86	9	57	43	4	7	43	1.53
280357--280397	6	6.8	6	84	15	50	39	0	0	60	0.96
281618--281643	13	2.0	13	100	0	52	30	15	15	38	1.88
284187--284212	13	2.0	13	100	0	52	38	15	15	30	1.88
286286--286316	15	2.1	15	93	0	53	12	22	16	48	1.80
288120--288164	21	2.1	21	84	8	56	22	20	4	53	1.63
314170--314217	21	2.3	21	96	0	87	62	0	14	22	1.32
314988--315129	50	2.8	50	83	3	187	29	16	11	41	1.85
317512--317736	79	2.8	78	90	2	333	28	24	13	33	1.93
317694--317768	28	2.7	28	79	4	89	24	25	20	30	1.98
325964--326142	51	3.5	50	82	5	207	27	25	12	34	1.92
326078--326463	79	4.9	79	82	4	451	25	26	15	32	1.95
332626--333253	60	10.3	61	83	5	716	25	27	19	28	1.99
333231--333676	43	10.2	43	80	9	390	19	28	11	39	1.87
333236--333648	86	4.7	86	82	5	483	21	29	12	37	1.89
333236--333663	129	3.3	127	79	8	432	20	28	12	38	1.88
336776--336953	51	3.5	50	80	5	189	28	24	10	36	1.89
336889--337295	79	5.2	79	81	8	438	26	24	15	33	1.95
336889--337295	158	2.6	154	80	5	494	26	24	15	33	1.95
339790--339820	9	3.4	9	95	0	53	87	0	12	0	0.55
340789--341186	60	6.6	60	87	4	543	25	26	18	30	1.98
341188--341462	44	6.5	45	74	12	147	20	26	12	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
341157--341459	130	2.4	123	80	8	310	20	26	12	40	1.87
341308--341462	82	1.9	80	84	5	204	20	27	12	40	1.88
341368--341443	38	2.0	37	82	10	91	19	27	14	38	1.91
341988--342072	20	3.8	20	72	26	71	25	12	15	45	1.82
341989--342132	50	2.9	50	85	7	193	27	15	14	42	1.86
344534--344639	28	3.5	28	79	18	122	23	28	19	28	1.99
344528--344654	64	2.0	64	93	0	218	22	26	18	31	1.97
344585--344781	79	2.5	79	88	2	279	26	23	15	34	1.95
344585--344831	79	3.1	79	81	5	266	25	22	15	36	1.93
351864--351888	13	1.9	13	100	0	50	32	16	16	36	1.90
363367--363429	27	2.3	27	88	0	90	20	22	31	25	1.98
363518--363592	27	2.8	27	85	0	87	24	20	30	25	1.98
363366--363682	163	1.9	163	95	1	573	32	13	24	29	1.93
365326--365554	112	2.1	112	96	0	424	32	5	32	29	1.81
366644--366668	13	1.9	13	100	0	50	32	16	16	36	1.90
366624--366688	33	2.0	33	87	6	96	35	18	13	32	1.90
366718--366790	20	3.7	19	83	7	76	39	16	15	28	1.89
367392--367444	20	2.6	21	78	3	63	30	18	11	39	1.86
372150--372321	62	2.9	62	86	4	246	38	12	12	36	1.81
374077--374111	3	11.7	3	100	0	70	65	0	0	34	0.93
385292--385354	20	2.9	22	76	11	76	50	0	0	49	1.00
401186--401239	19	2.9	19	86	2	74	87	5	7	0	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
401188--401238	9	5.6	9	86	11	59	88	5	5	0	0.64
401184--401238	24	2.3	24	84	15	78	87	7	5	0	0.68
401186--401229	1	44.0	1	81	0	52	90	2	6	0	0.51
402261--402381	37	3.3	37	89	4	181	24	14	14	47	1.81
402741--402888	55	2.6	57	93	4	255	31	31	15	21	1.94
402747--402950	28	7.0	29	78	15	199	30	29	16	24	1.96
402873--402965	31	3.0	30	78	10	91	24	29	16	30	1.96
402968--403146	34	5.3	33	82	6	200	17	30	14	37	1.90
402988--403146	67	2.4	66	78	5	176	18	31	13	35	1.90
403143--403606	49	9.8	48	71	13	241	26	24	17	31	1.97
403146--403406	87	3.0	87	83	1	342	26	23	18	31	1.97
403326--403557	100	2.3	97	84	2	284	25	25	17	32	1.97
407342--407409	32	2.1	32	94	0	118	38	17	10	33	1.84
407347--407430	19	4.7	19	76	18	90	38	19	10	32	1.86
408115--408253	52	2.7	52	82	7	140	37	15	23	24	1.93
408134--408888	49	16.0	48	77	12	676	32	17	24	26	1.97
408232--408879	43	14.0	43	76	13	560	31	17	25	26	1.97
408232--408879	92	7.0	92	90	2	971	31	17	25	26	1.97
408884--409004	33	3.7	33	86	2	181	18	19	33	28	1.96
408884--409007	65	1.9	65	98	0	239	20	19	32	28	1.97
409020--409099	27	3.0	27	92	0	133	28	16	33	21	1.95
409047--409228	100	1.9	96	81	9	224	34	13	30	21	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
409101--409445	63	5.5	64	72	15	174	32	15	29	23	1.95
409067--409230	34	4.9	35	79	9	155	35	12	31	20	1.90
409229--409444	30	6.9	32	78	10	200	31	16	28	24	1.96
409230--409443	63	3.4	61	74	14	195	31	16	27	24	1.97
409247--409426	93	1.9	94	93	3	310	31	16	27	23	1.96
410655--410692	14	2.8	14	96	4	69	0	0	18	81	0.69
417599--417626	13	2.2	13	100	0	56	39	17	14	28	1.89
417669--417798	19	7.8	18	67	29	92	36	17	10	35	1.85
417664--417796	32	4.1	32	96	0	230	35	18	10	36	1.85
417688--417776	13	5.9	13	68	27	52	33	17	11	37	1.86
418330--418354	13	1.9	13	100	0	50	40	20	16	24	1.91
420750--420792	16	2.5	16	81	11	50	51	9	2	37	1.47
421180--421222	14	3.2	13	84	15	52	72	0	0	27	0.85
421196--421228	10	3.0	11	91	8	50	72	0	0	27	0.85
421289--421325	18	2.0	19	89	5	58	51	0	10	37	1.37
421650--421971	168	1.9	168	82	5	400	47	4	3	45	1.39
422007--422054	21	2.2	21	88	7	69	43	2	0	54	1.12
422897--422955	22	2.6	23	79	10	59	62	0	0	37	0.95
423246--423277	2	16.0	2	100	0	64	50	0	0	50	1.00
425555--425642	46	1.9	46	92	0	149	42	17	13	27	1.86
425555--425653	46	2.2	45	89	3	146	43	16	15	25	1.86
428947--428973	6	4.5	6	100	0	54	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
430202--430240	2	19.0	2	94	5	69	48	0	2	48	1.15
430840--430879	18	2.2	18	86	0	53	50	2	5	42	1.37
431217--431250	16	2.1	16	89	10	52	52	0	2	44	1.16
431714--431761	25	1.9	25	83	8	62	45	4	4	45	1.41
433440--433553	52	2.2	51	81	4	122	28	14	14	42	1.85
435407--435453	24	2.0	24	82	0	58	46	8	17	27	1.76
435531--435555	13	1.9	13	100	0	50	36	16	16	32	1.90
435512--435576	33	2.0	33	87	3	96	41	16	13	27	1.87
437146--437173	2	14.0	2	100	0	56	50	0	0	50	1.00
440052--440199	70	2.1	70	97	1	280	32	6	15	45	1.72
440239--440312	33	2.2	33	87	0	103	43	12	14	29	1.82
440616--440668	21	2.5	22	81	3	63	47	0	7	45	1.31

Tables:   1   2   3

The End!