genome.fa.s134.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold134
Parameters: 2 7 7 80 10 50 1000
Length:  811437

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 559 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
205204--205229	3	8.7	3	100	0	52	34	0	0	65	0.93
205288--205324	15	2.5	15	90	0	56	16	8	0	75	1.02
206114--206188	19	4.4	16	73	26	57	56	0	1	42	1.08
206122--206184	32	2.0	31	90	3	99	53	0	0	46	1.00
206119--206217	15	6.6	15	74	19	66	58	0	0	41	0.98
206516--206576	2	32.0	2	75	9	56	45	0	1	52	1.10
206495--206592	40	2.5	40	78	14	114	45	0	1	53	1.07
213759--213813	21	2.6	21	80	13	69	52	0	0	47	1.00
213762--213811	26	1.9	26	84	8	66	52	0	0	48	1.00
213765--213809	15	2.9	15	93	3	72	48	0	0	51	1.00
214070--214112	20	2.1	21	79	12	54	46	0	4	48	1.22
214079--214116	20	2.0	20	89	5	60	39	0	5	55	1.23
221042--221083	20	2.2	18	91	8	66	42	0	4	52	1.22
225676--225733	29	2.0	29	100	0	116	41	10	24	24	1.86
233120--233152	2	16.5	2	100	0	66	51	0	0	48	1.00
236465--236529	11	5.9	11	75	13	71	63	1	0	35	1.04
236467--236529	23	2.9	22	79	11	76	63	1	0	34	1.04
243863--243915	2	28.0	2	81	11	58	45	0	1	52	1.11
249947--249979	15	2.3	15	89	5	50	63	0	3	33	1.10
250884--250977	2	48.0	2	74	16	63	40	3	3	53	1.33
250846--250908	31	2.1	30	85	8	83	41	3	1	53	1.26
251519--251610	32	2.8	33	80	8	82	54	3	1	41	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
251572--251641	27	2.6	28	74	21	69	50	0	0	50	1.00
251837--251921	13	6.0	15	73	15	74	56	0	1	42	1.07
251846--251935	30	3.3	27	71	17	78	57	0	1	41	1.06
251930--251991	17	3.6	17	74	10	54	64	3	1	30	1.19
251953--252014	24	2.6	25	75	14	67	62	4	3	29	1.31
252009--252060	14	3.4	14	75	17	50	55	0	0	44	0.99
252016--252068	15	3.4	15	75	15	54	58	0	0	41	0.98
252883--252944	8	7.2	8	85	10	79	0	16	0	83	0.64
252883--252940	15	3.9	15	82	11	75	0	15	0	84	0.62
252894--252938	13	3.3	13	88	11	72	0	17	0	82	0.68
252898--252943	23	2.0	23	91	4	74	0	19	0	80	0.71
252987--253015	12	2.5	12	94	5	51	55	0	0	44	0.99
253831--253895	34	1.9	33	84	6	85	61	1	0	36	1.05
254551--254598	19	2.5	19	80	16	55	62	0	0	37	0.95
254925--254967	6	7.0	6	85	15	61	69	0	0	30	0.88
254925--254975	26	2.0	25	92	3	84	72	0	0	27	0.85
255058--255111	15	3.4	16	82	5	58	68	5	0	25	1.11
255267--255320	13	4.2	13	78	21	69	59	0	0	40	0.98
255269--255320	19	2.7	19	77	8	61	61	0	0	38	0.96
255282--255361	22	3.2	25	70	18	69	55	0	3	41	1.18
255395--255436	6	7.0	6	81	10	50	71	0	2	26	0.98
255853--255893	17	2.5	17	92	7	68	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
255853--255906	17	3.3	18	78	14	55	50	0	0	50	1.00
256242--256284	12	3.3	14	81	15	56	0	11	2	86	0.67
256608--256647	14	2.9	14	88	0	62	0	22	0	77	0.77
259169--259193	13	1.9	13	100	0	50	40	0	0	60	0.97
261743--261772	2	15.0	2	100	0	60	0	50	0	50	1.00
262185--262218	16	2.1	16	100	0	68	29	11	11	47	1.76
262290--262314	8	3.1	8	100	0	50	64	0	0	36	0.94
264983--265014	8	4.0	8	100	0	64	75	0	0	25	0.81
264983--265023	3	14.3	3	80	19	52	70	0	0	29	0.87
265014--265058	14	3.1	14	80	3	54	46	0	0	53	1.00
272019--272057	13	2.8	14	88	7	53	17	0	5	76	0.96
272021--272062	14	3.1	14	86	10	52	16	0	4	78	0.91
273927--274024	49	2.0	49	100	0	196	34	16	26	22	1.95
281459--281500	19	2.2	20	86	4	59	28	2	2	66	1.16
281858--281936	27	2.9	27	84	0	104	24	8	21	45	1.80
281917--281962	24	1.9	24	82	8	58	23	6	23	45	1.76
281927--281971	23	2.0	23	82	8	56	26	6	20	46	1.75
286355--286428	27	2.7	27	78	0	85	27	5	14	52	1.63
286413--286458	24	1.9	24	86	8	67	21	8	23	45	1.80
288243--288277	18	1.9	18	94	0	61	31	11	0	57	1.34
291595--291639	18	2.6	16	80	13	54	60	2	0	37	1.09
291652--291694	19	2.3	19	88	8	61	27	0	6	65	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
292307--292340	2	17.0	2	93	0	59	50	2	0	47	1.16
292697--292819	64	1.9	64	86	3	176	52	8	9	28	1.64
292953--292995	14	3.0	14	77	16	52	32	0	0	67	0.91
293537--293583	24	2.0	23	84	16	60	40	0	12	46	1.42
296534--296589	22	2.6	22	75	10	55	55	3	0	41	1.17
297780--297962	91	2.0	91	97	0	348	39	8	10	40	1.70
299912--299983	13	5.5	13	86	0	108	30	6	41	20	1.79
299911--299980	26	2.7	26	100	0	140	31	7	40	21	1.80
300039--300140	27	3.9	27	82	3	111	46	21	8	23	1.79
304431--304461	13	2.4	13	94	0	53	35	6	38	19	1.77
304518--304616	27	3.9	24	70	21	67	46	21	9	23	1.79
304549--304621	27	2.7	27	86	0	101	47	17	9	24	1.77
309905--309952	12	4.0	12	78	5	53	31	0	4	64	1.12
310894--310957	33	1.9	33	100	0	128	37	9	6	46	1.61
310962--310988	2	13.5	2	100	0	54	48	0	0	51	1.00
316492--316542	24	2.1	24	85	3	66	27	7	1	62	1.33
319812--319859	18	2.6	17	78	12	51	75	0	22	2	0.91
320528--320582	26	2.1	26	83	6	67	36	1	3	58	1.26
320547--320571	11	2.3	11	100	0	50	36	0	0	64	0.94
320537--320587	15	2.9	17	83	16	61	33	1	3	60	1.26
321634--321674	11	3.8	11	96	3	75	26	0	7	65	1.18
328080--328142	33	1.9	33	96	0	117	30	17	12	39	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
328413--328442	11	2.6	12	89	10	53	16	0	6	76	0.99
328615--328833	34	6.5	34	88	1	298	24	8	26	40	1.83
328615--328835	67	3.3	67	88	1	325	24	8	27	40	1.83
329138--329194	19	3.0	19	92	0	87	29	17	19	33	1.95
333266--333483	34	6.5	34	88	1	296	24	7	27	40	1.82
333266--333485	67	3.3	67	88	1	323	24	7	27	40	1.82
335932--335987	27	2.1	27	83	6	69	58	3	7	30	1.42
336323--336369	15	2.9	17	87	6	55	76	0	21	2	0.89
336341--336369	15	1.9	15	100	0	58	82	0	17	0	0.66
336581--336619	12	3.2	12	82	10	53	28	0	0	71	0.86
339669--339717	17	3.1	17	74	14	50	36	0	8	55	1.30
340520--340551	16	2.0	16	93	0	55	9	18	34	37	1.83
340533--340647	53	2.1	54	85	4	153	21	15	26	35	1.94
341344--341446	16	6.4	16	85	2	125	18	17	22	41	1.90
345385--345457	27	2.7	27	87	4	103	24	5	23	46	1.73
349951--350015	27	2.4	27	84	5	78	27	4	21	46	1.71
350718--350762	19	2.4	19	96	3	83	62	4	13	20	1.48
351685--351709	11	2.3	11	100	0	50	84	0	0	16	0.63
353830--353877	19	2.6	18	80	9	60	22	2	10	64	1.35
353890--354017	64	2.0	64	89	0	193	48	9	15	26	1.75
355099--355152	27	2.0	27	92	0	90	48	22	9	20	1.78
356808--357077	132	2.0	132	97	0	504	29	20	21	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
361246--361280	18	1.9	18	94	0	61	31	11	0	57	1.34
362175--362219	17	2.6	18	78	7	56	57	2	0	40	1.11
362890--362943	2	27.0	2	84	0	72	50	7	0	42	1.30
363519--363549	14	2.2	14	94	0	53	38	0	0	61	0.96
363694--363722	2	14.5	2	100	0	58	48	0	0	51	1.00
367859--367956	27	3.6	27	91	0	160	24	7	22	45	1.77
367859--367992	54	2.5	54	84	3	139	24	7	20	47	1.75
368545--368586	11	3.8	11	87	6	59	64	0	0	35	0.94
369439--369476	20	1.9	20	100	0	76	42	10	0	47	1.38
369666--369701	17	2.1	18	89	5	56	36	0	11	52	1.37

Tables:   1   2   3   4   5