genome.fa.s134.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold134
Parameters: 2 7 7 80 10 50 1000
Length:  811437

Tables:   1   2   3   4   5   

This is table  3  of  5  ( 559 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
371390--371431	2	21.0	2	100	0	84	50	0	0	50	1.00
371593--371659	25	2.8	24	82	8	82	13	7	14	64	1.49
378567--378605	2	19.5	2	83	0	51	51	2	5	41	1.38
380747--380821	31	2.4	30	80	10	82	37	6	25	30	1.82
380845--380885	19	2.2	19	91	4	66	75	0	24	0	0.80
381024--381063	19	2.1	19	85	0	53	20	7	10	62	1.50
381930--381974	22	2.0	23	86	4	65	33	0	0	66	0.92
381935--381974	11	3.6	11	86	0	53	35	0	0	65	0.93
382440--382487	20	2.2	22	78	14	55	41	2	4	52	1.32
382446--382487	20	2.0	21	86	4	59	42	2	2	52	1.27
382939--383003	32	2.0	32	82	8	78	53	0	1	44	1.09
383468--383499	2	16.0	2	100	0	64	50	0	0	50	1.00
385708--385757	24	2.1	24	85	7	66	30	4	6	60	1.39
387260--387303	21	2.1	21	83	8	54	47	22	22	6	1.75
391854--391898	5	9.0	5	81	18	58	17	2	2	77	0.97
392539--392600	1	62.0	1	78	0	61	88	3	6	1	0.66
392525--392600	14	5.5	14	77	13	59	84	3	6	5	0.87
392539--392601	24	2.6	25	85	9	78	87	3	7	1	0.71
392539--392601	29	2.2	29	91	8	103	87	3	7	1	0.71
394520--394581	24	2.5	25	79	10	65	29	4	9	56	1.52
395847--395886	20	2.0	20	90	0	62	32	22	2	42	1.67
395880--395941	25	2.4	25	83	5	79	43	1	0	54	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
404635--404668	17	2.0	17	100	0	68	17	11	11	58	1.62
404633--404674	17	2.7	15	82	13	57	21	9	9	59	1.57
410147--410185	2	19.5	2	100	0	78	48	0	0	51	1.00
410349--410403	12	4.9	11	80	12	67	36	1	0	61	1.06
410348--410394	22	2.2	21	88	3	67	36	2	0	61	1.08
410361--410410	6	8.7	6	84	8	68	30	2	0	68	1.01
411513--411548	3	12.0	3	100	0	72	66	0	0	33	0.92
411672--411696	11	2.3	11	100	0	50	48	0	0	52	1.00
411724--411763	22	1.9	20	85	10	53	50	2	0	47	1.14
412442--412485	6	7.7	6	85	10	65	31	2	0	65	1.05
412447--412481	16	2.2	16	94	0	61	31	2	0	65	1.07
412442--412485	22	2.0	22	95	0	79	31	2	0	65	1.05
412446--412492	22	2.2	21	85	7	60	31	6	0	61	1.21
412637--412678	11	3.8	11	81	6	50	61	2	0	35	1.09
414498--414537	18	2.2	19	86	4	55	72	5	5	17	1.21
416576--416611	2	18.0	2	100	0	72	50	0	0	50	1.00
416611--416637	2	13.5	2	100	0	54	0	0	48	51	1.00
421490--421537	18	2.8	16	78	12	51	47	0	0	52	1.00
421505--421537	15	2.1	16	88	5	50	48	0	0	51	1.00
427533--427571	21	2.0	21	85	10	55	28	0	2	69	1.02
432692--432900	50	4.2	50	91	0	310	30	17	20	31	1.95
437293--437512	50	4.2	51	80	14	268	28	19	23	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
437380--437499	60	2.0	61	96	1	224	25	20	29	25	1.99
438007--438039	15	2.1	16	94	5	59	78	0	0	21	0.75
441505--441550	25	1.9	23	86	8	65	50	2	0	47	1.13
442067--442118	21	2.5	20	81	6	50	48	5	0	46	1.26
442764--442788	10	2.5	10	100	0	50	32	0	0	68	0.90
443822--443891	24	2.8	25	89	6	99	44	25	8	21	1.80
443876--443946	27	2.6	27	88	6	99	46	23	7	22	1.76
443824--443949	24	4.9	24	77	12	92	46	25	7	21	1.77
448416--448538	24	4.8	25	82	10	106	44	26	8	21	1.79
448418--448538	25	4.7	26	83	9	122	44	26	7	21	1.78
448635--448660	2	13.0	2	100	0	52	50	0	0	50	1.00
449885--449925	19	2.1	20	86	4	57	26	7	4	60	1.43
450479--450509	15	2.0	16	93	6	55	41	0	0	58	0.98
450459--450504	23	1.9	25	86	8	69	45	2	0	52	1.13
454692--454718	12	2.2	12	100	0	54	33	7	0	59	1.25
455189--455217	2	14.5	2	100	0	58	51	0	0	48	1.00
457529--457600	28	2.7	27	85	6	85	15	8	13	62	1.53
457530--457600	27	2.6	27	84	2	88	14	8	14	63	1.51
459438--459469	4	7.8	4	96	3	55	21	0	0	78	0.76
460369--460401	16	2.1	16	88	5	50	48	0	0	51	1.00
461579--461605	4	6.8	4	100	0	54	22	0	0	77	0.76
463471--463513	16	2.8	16	80	16	54	39	0	6	53	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
463737--463775	15	2.5	15	80	19	53	30	0	0	69	0.89
463681--463776	27	3.6	27	69	17	76	38	0	1	60	1.04
463674--463801	69	1.9	68	84	11	172	40	0	0	58	1.03
464193--464228	16	2.2	17	90	5	56	55	8	5	30	1.52
464775--464824	22	2.3	22	96	0	91	40	4	10	46	1.56
464788--464826	12	3.4	12	79	13	55	35	5	12	46	1.65
464765--464812	2	24.0	2	82	0	60	43	2	6	47	1.40
465084--465125	21	2.0	21	85	0	57	69	0	30	0	0.89
465082--465138	19	2.9	18	80	15	53	71	1	24	1	1.04
467700--467735	16	2.3	16	90	4	56	0	8	2	88	0.59
474493--474542	24	2.1	24	85	7	66	62	6	4	28	1.37
475976--476018	19	2.1	21	87	8	63	32	2	4	60	1.30
477040--477088	25	2.0	25	91	0	80	32	6	6	55	1.49
477795--477831	13	2.8	13	83	0	56	89	5	0	5	0.60
477801--477836	18	1.9	18	88	5	54	80	5	2	11	0.98
478073--478117	2	22.5	2	100	0	90	51	0	0	48	1.00
478529--478569	22	1.9	21	90	5	64	56	2	0	41	1.13
480065--480247	34	5.4	34	84	1	208	27	6	24	41	1.79
480554--480597	19	2.3	19	84	7	54	29	15	18	36	1.92
484660--484844	34	5.5	34	84	0	210	27	6	24	41	1.79
484660--484844	102	1.8	101	83	5	248	27	6	24	41	1.79
485194--485234	20	2.0	20	90	0	64	31	19	2	46	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
485229--485290	25	2.4	27	86	5	83	43	1	0	54	1.09
487638--487924	50	5.8	50	92	2	452	28	20	17	32	1.96
488021--488053	13	2.6	13	90	4	50	78	9	0	12	0.95
488503--488535	2	16.5	2	100	0	66	48	0	0	51	1.00
490072--490111	2	20.0	2	94	0	71	50	2	0	47	1.14
490249--490280	16	1.9	17	93	6	57	56	0	6	37	1.25
493652--493697	21	2.1	22	84	4	58	19	30	19	30	1.97
496150--496188	20	2.0	20	100	0	78	41	5	46	7	1.55
497383--497415	6	5.5	6	92	0	57	33	12	0	54	1.37
498068--498124	17	3.1	18	77	10	62	54	1	1	42	1.21
498750--498785	2	18.0	2	100	0	72	50	0	0	50	1.00
499064--499122	28	2.1	29	87	3	84	47	3	0	49	1.18
499737--499921	34	5.5	34	85	5	250	41	27	7	24	1.81
499737--499921	102	1.8	101	90	3	300	41	27	7	24	1.81
504332--504514	34	5.4	34	85	5	246	40	27	7	24	1.81
504332--504514	102	1.8	101	90	3	296	40	27	7	24	1.81
504818--504867	6	8.7	6	86	8	77	32	2	0	66	1.03
504818--504863	16	2.8	16	90	6	65	32	2	0	65	1.05
504823--504867	22	2.0	22	95	0	81	31	2	0	66	1.04
504823--504874	22	2.5	21	87	6	61	30	5	0	63	1.18
505019--505060	11	3.8	11	87	6	59	64	0	0	35	0.94
506891--506930	18	2.2	19	90	4	64	75	2	5	17	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
513194--513224	12	2.6	12	100	0	62	16	0	19	64	1.29
513246--513289	10	4.2	10	80	11	52	61	0	2	36	1.09
513250--513295	22	2.1	22	100	0	92	58	0	4	36	1.18
514110--514144	4	8.8	4	100	0	70	22	0	0	77	0.78
514971--515152	50	3.7	49	92	2	292	30	19	19	30	1.96
519553--519684	50	2.6	50	90	2	194	32	19	16	31	1.94
520313--520339	12	2.2	12	100	0	54	59	7	0	33	1.25
521221--521261	22	2.0	22	85	9	59	43	0	9	46	1.36
521673--521739	30	2.2	30	100	0	134	13	23	17	44	1.85
526939--527009	27	2.6	27	88	0	97	26	7	21	45	1.77

Tables:   1   2   3   4   5