genome.fa.s134.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold134
Parameters: 2 7 7 80 10 50 1000
Length:  811437

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 559 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
677413--677465	15	3.6	14	79	18	54	58	0	0	41	0.98
677421--677486	17	3.6	18	78	12	64	56	0	0	43	0.99
677441--677486	18	2.8	18	78	15	55	54	0	0	45	0.99
680204--680269	17	3.6	18	78	12	64	54	0	0	45	0.99
680224--680281	20	3.3	18	79	15	61	50	1	0	48	1.11
680241--680295	2	28.0	2	75	10	51	49	1	0	49	1.11
680241--680293	20	2.7	20	83	13	74	49	1	0	49	1.12
680802--680858	29	2.0	29	82	6	71	63	0	3	33	1.12
680762--680865	44	2.4	44	82	10	117	55	0	5	38	1.24
680797--680865	22	3.1	22	74	17	72	62	0	2	34	1.10
681579--681617	18	2.2	18	90	0	60	33	28	0	38	1.57
681808--684809	216	13.9	216	97	1	5687	47	4	7	40	1.52
681808--684809	431	7.0	431	97	1	5674	47	4	7	40	1.52
685444--685489	2	24.0	2	82	8	60	50	0	2	47	1.13
686458--686500	14	3.3	13	87	6	52	55	2	0	41	1.12
686496--686541	6	7.7	6	77	18	51	34	0	0	65	0.93
686490--686542	13	4.0	13	79	16	56	35	0	0	64	0.94
686482--686542	23	2.7	23	89	5	88	37	1	0	60	1.07
686762--686820	32	1.9	29	83	10	73	38	0	0	61	0.96
686756--686869	35	3.5	34	77	16	100	42	1	0	55	1.16
687534--687563	2	14.5	2	93	6	51	46	0	3	50	1.18
689392--689422	15	2.0	16	93	6	55	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
690315--690361	17	2.9	17	76	17	55	53	0	0	46	1.00
690646--690708	25	2.6	25	97	2	119	47	3	0	49	1.17
690914--690983	16	4.2	16	73	22	63	61	0	2	35	1.11
690914--690991	14	5.2	14	72	17	52	61	0	2	35	1.10
690922--690992	7	9.5	8	71	20	64	61	0	1	36	1.05
690956--691003	16	2.9	16	81	15	53	62	2	0	35	1.07
691599--691656	9	6.3	9	75	11	55	62	1	0	36	1.06
694767--694837	32	2.2	32	82	12	83	54	2	2	39	1.29
694787--694842	18	3.3	18	68	25	50	51	1	1	44	1.22
701093--701143	26	2.0	25	84	3	66	64	0	0	35	0.94
701119--701167	19	2.5	19	80	9	55	63	0	2	34	1.06
701149--701206	26	2.1	27	84	9	73	60	0	1	37	1.07
701120--701215	49	2.0	50	84	10	119	59	1	1	38	1.11
706262--706299	18	2.1	18	90	0	58	34	13	5	47	1.65
707546--707594	12	4.2	12	75	15	50	38	0	0	61	0.96
707522--707566	15	2.9	15	80	3	54	44	0	0	55	0.99
708150--708174	12	2.1	12	100	0	50	36	0	0	64	0.94
708269--708318	20	2.7	18	75	22	50	52	0	4	44	1.20
708347--708376	10	2.8	11	90	10	53	40	0	0	60	0.97
711641--712261	315	2.0	314	93	0	1064	29	12	17	40	1.86
712855--712947	36	2.6	36	82	3	116	61	1	1	36	1.10
720517--720580	25	2.6	24	75	12	67	42	0	1	56	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
720534--720576	12	3.7	12	81	6	52	41	0	2	55	1.12
721011--721096	14	6.5	14	74	11	65	44	0	0	55	0.99
721003--721066	24	2.7	23	73	7	65	46	0	0	53	1.00
724129--724160	15	2.1	15	100	0	64	37	6	6	50	1.53
724199--724225	14	1.9	14	100	0	54	40	0	0	59	0.98
725505--725535	4	7.8	4	92	0	53	19	0	3	77	0.90
728277--728430	81	1.9	81	81	2	184	26	22	17	33	1.96
740583--740636	22	2.5	22	85	5	67	38	9	1	50	1.45
740814--740856	16	2.8	14	83	16	50	55	0	0	44	0.99
744325--744381	25	2.1	25	84	12	69	50	0	0	49	1.00
744713--745019	92	3.4	91	87	4	426	27	19	15	37	1.92
748796--748846	27	1.9	26	88	4	75	45	0	1	52	1.12
763717--764142	233	1.9	225	81	8	520	44	7	5	42	1.56
764180--764205	2	13.0	2	100	0	52	50	0	0	50	1.00
765350--765387	18	2.1	18	85	9	51	42	0	2	55	1.14
780229--780265	17	2.1	18	90	5	58	35	0	0	64	0.94
782673--782746	27	2.7	29	77	14	84	40	0	1	58	1.07
782685--782738	16	3.7	15	71	19	51	44	0	1	53	1.11
782856--782886	13	2.3	14	94	5	55	58	0	0	41	0.98
782855--782887	14	2.4	14	89	0	57	60	0	0	39	0.97
783088--783132	22	2.0	22	83	8	56	33	0	0	66	0.92
784871--784914	23	1.9	23	95	0	79	36	15	18	29	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
785437--785470	18	1.9	17	94	5	59	70	0	11	17	1.16
786208--786257	11	4.5	11	78	16	50	34	0	6	60	1.21
790637--790697	14	4.1	14	71	21	52	32	1	1	63	1.13
790636--790673	19	2.0	19	89	0	58	31	0	0	68	0.90
792781--792820	22	1.9	20	85	10	53	42	5	2	50	1.37
792998--793031	16	2.2	16	94	5	61	38	0	5	55	1.24
794098--794131	16	2.1	17	88	5	52	44	0	0	55	0.99
795530--795568	13	3.2	13	85	7	55	56	2	0	41	1.13
795556--795593	19	2.0	19	89	0	58	65	0	2	31	1.06
799106--799734	210	3.0	209	86	1	866	30	18	20	30	1.96
801780--801902	63	2.0	63	88	0	183	30	9	29	30	1.89
805794--805818	13	1.9	13	100	0	50	32	16	16	36	1.90
805827--805947	52	2.3	52	94	0	215	34	18	17	29	1.94

Tables:   1   2   3   4   5

The End!