Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1348
Parameters: 2 7 7 80 10 50 1000
Length:  233253

Tables:   1   2   3   

This is table  3  of  3  ( 273 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
220206--220247
15
2.5
17
81
18
61
52
0
7
40
1.29
221390--221438
25
2.0
25
84
8
64
63
4
0
32
1.13
222457--222497
21
1.9
22
90
5
66
48
0
0
51
1.00
223010--223054
18
2.6
18
82
10
58
44
2
0
53
1.13
223428--223512
21
4.3
20
81
12
88
63
1
0
35
1.02
223462--223510
24
2.2
21
82
10
53
65
2
0
32
1.04
223705--223754
14
3.1
17
75
18
54
66
0
0
34
0.92
223715--223758
23
2.1
21
84
16
56
63
0
0
36
0.95
224850--224890
2
20.5
2
100
0
82
51
0
0
48
1.00
225911--226010
45
2.1
49
87
7
145
48
0
0
52
1.00
226485--226517
14
2.3
15
89
5
50
36
0
0
63
0.95
226521--226597
35
2.2
35
79
11
86
45
1
0
53
1.08
226792--226897
11
9.7
11
71
22
55
31
0
2
65
1.14
226824--226906
43
1.9
44
83
11
109
31
1
2
65
1.13
227024--227052
11
2.7
11
94
5
51
17
0
6
75
1.01
228047--228099
26
2.0
27
85
10
74
47
0
0
52
1.00
228190--228246
3
19.0
3
92
0
96
31
1
1
64
1.13
228537--228585
22
2.1
25
85
11
68
40
0
2
57
1.10
228569--228615
10
4.7
10
82
7
60
48
2
2
46
1.25
228573--228611
20
1.9
21
94
5
71
48
2
2
46
1.29
228880--228920
21
1.9
22
85
5
57
39
0
2
58
1.11
228907--228960
14
3.8
14
81
11
65
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
228915--228959
22
2.0
23
82
4
56
53
0
0
46
1.00
228892--228963
14
4.9
14
75
20
58
48
0
0
51
1.00
229518--229550
17
2.0
17
88
5
50
63
3
0
33
1.10
229534--229592
31
1.9
31
82
6
75
57
6
0
35
1.25
229523--229596
25
3.1
22
81
12
78
60
5
0
33
1.19
229590--229636
18
2.8
16
78
15
58
57
0
0
42
0.98
230057--230085
12
2.3
13
94
5
51
65
0
0
34
0.93
230501--230535
14
2.6
13
90
4
52
48
0
0
51
1.00
230922--230995
35
2.1
34
85
7
94
54
0
0
45
1.00
231227--231271
19
2.3
20
78
17
58
51
0
0
48
1.00
232945--232987
22
2.0
22
86
9
61
53
0
2
44
1.13

Tables:   1   2   3

The End!