genome.fa.s1355.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1355
Parameters: 2 7 7 80 10 50 1000
Length:  343905

Tables:   1   2   3   

This is table  3  of  3  ( 298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
284573--285659	27	35.0	27	69	21	261	36	12	29	21	1.90
284113--285720	186	8.5	185	78	11	1235	36	13	29	20	1.90
284235--285516	281	4.5	281	87	5	1577	36	12	30	20	1.90
284252--285896	61	26.2	62	73	16	564	35	13	29	21	1.91
285485--285899	30	13.7	30	83	9	416	32	14	29	22	1.94
286533--286971	112	3.9	110	83	4	515	34	16	12	37	1.86
287506--287644	44	3.2	43	71	11	129	23	18	14	43	1.87
287443--287695	88	2.9	87	82	2	283	23	20	14	42	1.88
288005--288396	59	6.6	59	79	4	324	19	14	18	47	1.83
288048--288131	30	2.9	29	71	15	91	21	16	15	46	1.84
288021--288115	30	3.2	28	71	14	75	21	15	14	48	1.81
288010--288336	60	5.5	60	77	5	229	19	14	18	47	1.83
288512--288729	70	3.0	70	75	8	197	27	13	12	45	1.81
289239--289340	40	2.6	39	76	13	109	20	25	9	44	1.82
289239--289409	80	2.1	80	79	4	175	19	22	11	46	1.82
289280--289849	40	14.1	40	68	11	137	19	21	13	45	1.84
289318--289534	81	2.7	80	78	7	206	19	20	13	46	1.83
289275--289582	40	7.6	40	70	7	140	19	20	13	45	1.84
290101--290389	74	3.9	74	78	5	264	17	23	13	44	1.84
294039--294077	15	2.7	15	84	4	53	0	25	0	74	0.82
294043--294087	21	2.1	21	84	8	56	0	28	0	71	0.87
294584--295133	167	3.4	166	79	7	518	48	7	12	31	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
299637--299683	22	2.1	22	84	7	60	8	12	4	74	1.19
299938--300004	30	2.2	30	89	0	98	16	16	13	53	1.73
300076--300117	12	3.3	12	81	12	57	9	21	11	57	1.63
301797--301868	34	2.1	34	97	0	135	31	18	5	44	1.72
307661--307687	13	2.1	13	100	0	54	29	14	14	40	1.86
307675--307728	19	2.7	21	88	5	76	33	16	18	31	1.93
313941--313968	13	2.2	13	100	0	56	28	14	14	42	1.84
315787--315826	18	2.2	18	95	4	71	55	0	32	12	1.38
315822--315898	37	2.1	37	95	0	136	33	2	31	32	1.72
315831--315899	18	3.7	19	74	12	72	33	1	31	33	1.67
316439--316465	13	2.1	13	100	0	54	29	14	14	40	1.86
316451--316506	19	2.8	21	86	8	80	33	14	17	33	1.90
316551--316581	13	2.4	13	94	0	53	35	16	12	35	1.87
316535--316601	33	2.0	32	88	11	100	35	13	17	32	1.89
319873--319920	20	2.4	20	89	6	71	31	16	14	37	1.89
320230--320269	20	2.0	20	85	5	53	27	12	7	52	1.66
320887--322676	42	42.8	42	74	7	1185	34	18	29	17	1.94
322806--322906	44	2.3	44	83	6	116	46	11	20	20	1.82
323306--323500	89	2.2	89	83	0	255	31	15	26	26	1.96
323765--323928	88	1.9	87	81	1	202	43	13	18	23	1.86
324008--324240	88	2.7	89	75	5	224	44	15	17	21	1.86
325255--325295	18	2.3	18	86	0	55	4	17	0	78	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
331260--331307	21	2.2	21	85	10	62	37	4	6	52	1.46
332303--332336	10	3.4	10	87	0	50	0	23	32	44	1.54
332491--332539	19	2.6	18	81	9	53	6	10	4	79	1.03
332917--332983	30	2.2	30	91	0	107	17	19	11	50	1.77
333047--333096	25	2.0	25	88	7	75	10	14	14	62	1.55
333414--333459	10	4.8	10	82	15	53	26	0	0	73	0.83
333403--333461	27	2.2	26	85	11	75	28	3	0	67	1.06
335420--335820	155	2.6	155	79	4	391	27	16	15	40	1.89
337613--337653	15	2.7	15	92	0	64	39	4	14	41	1.67
339445--339476	16	1.9	17	93	6	57	31	15	9	43	1.78
339512--339566	27	2.1	26	90	10	85	52	3	0	43	1.18
343108--343133	13	2.0	13	100	0	52	38	15	15	30	1.88
343089--343152	33	2.0	32	87	9	94	40	15	15	28	1.88
343089--343152	32	2.0	33	87	9	96	40	15	15	28	1.88

Tables:   1   2   3

The End!