genome.fa.s1355.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1355
Parameters: 2 7 7 80 10 50 1000
Length:  343905

Tables:   1   2   3   

This is table  1  of  3  ( 298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
912--992	28	3.1	26	84	7	110	32	18	29	19	1.96
3158--3297	51	2.7	52	87	1	201	45	11	12	30	1.77
3354--3395	20	2.1	20	86	0	57	30	16	9	42	1.80
7061--7126	34	1.9	34	84	6	89	43	16	10	28	1.81
7965--7990	13	2.0	13	100	0	52	30	15	15	38	1.88
10521--10546	13	2.0	13	100	0	52	30	23	15	30	1.95
12552--12582	15	2.1	15	93	0	53	12	22	16	48	1.80
14386--14430	22	2.1	21	84	8	56	22	15	6	55	1.63
14375--14430	21	2.7	21	75	13	62	23	14	7	55	1.63
16658--16683	13	2.0	13	100	0	52	30	15	15	38	1.88
18597--19754	386	3.0	386	98	0	2199	30	19	16	34	1.94
20274--20559	79	3.6	79	81	8	339	27	26	12	33	1.92
20416--20688	130	2.1	130	86	0	375	29	26	10	32	1.90
20493--20608	51	2.3	51	88	4	171	31	29	8	31	1.87
20357--20751	209	1.9	209	79	5	449	29	25	10	34	1.89
20543--20784	79	3.0	80	79	7	269	30	24	11	33	1.91
22675--22705	15	2.1	15	100	0	62	45	0	35	19	1.51
22680--22713	15	2.3	15	89	0	50	55	0	29	14	1.40
25844--25911	22	3.1	22	77	8	75	39	7	14	38	1.74
25969--26474	52	9.9	52	74	13	392	39	2	5	51	1.40
25969--26474	99	4.9	105	77	13	441	39	2	5	51	1.40
26120--26270	47	3.1	47	72	15	144	43	3	5	48	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26016--26468	206	2.2	202	79	11	462	40	2	5	51	1.40
26376--26559	45	4.1	44	76	7	158	41	2	4	51	1.36
26374--26570	43	4.5	43	77	8	173	42	2	4	51	1.34
26908--26955	2	24.0	2	100	0	96	0	50	0	50	1.00
27341--27382	2	21.0	2	95	0	75	50	0	2	47	1.14
31529--31614	45	1.9	45	83	9	113	44	5	8	41	1.58
31665--31699	17	2.0	18	88	5	54	54	0	2	42	1.15
32408--32456	16	3.1	16	79	2	55	36	2	0	61	1.08
32746--32782	19	1.9	19	88	0	56	48	5	2	43	1.40
32753--32812	29	2.1	29	84	6	77	40	6	5	48	1.51
33483--33520	2	19.0	2	100	0	76	50	0	0	50	1.00
34677--34711	2	17.5	2	100	0	70	51	0	48	0	1.00
36094--36246	68	2.2	68	78	15	156	48	5	4	41	1.48
36151--36212	13	4.6	14	75	20	51	51	3	3	41	1.34
36125--36200	28	2.8	27	82	4	89	50	9	3	36	1.53
36613--36650	2	19.0	2	100	0	76	50	0	0	50	1.00
36746--36788	11	3.9	11	76	11	52	62	0	2	34	1.08
37151--37198	25	1.9	25	95	0	87	33	27	14	25	1.94
42700--42724	12	2.1	12	100	0	50	28	0	8	64	1.22
44989--45044	20	2.8	20	83	2	76	26	14	12	46	1.80
48266--48295	12	2.4	13	88	11	53	0	26	0	73	0.84
48544--48582	18	2.2	18	90	4	62	79	0	0	20	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49224--49257	16	2.1	17	88	5	52	58	2	38	0	1.13
49759--49799	18	2.3	18	82	0	55	70	7	0	21	1.11
50412--50791	184	2.1	185	91	0	627	31	12	16	40	1.85
52291--52339	20	2.5	20	79	0	62	32	6	0	61	1.21
52531--52565	6	5.8	6	86	0	52	71	11	2	14	1.25
52532--52571	12	3.3	12	89	0	53	72	10	7	10	1.28
53851--54137	39	7.3	40	70	12	110	26	17	13	42	1.86
53819--53989	79	2.2	79	80	4	184	27	16	10	45	1.80
53971--54149	40	4.6	39	77	8	166	24	17	15	42	1.88
54016--54163	77	1.9	79	84	5	203	26	17	15	40	1.89
54204--54310	38	2.8	38	72	8	101	28	14	15	41	1.86
56324--56357	2	17.0	2	93	0	59	47	0	2	50	1.16
56402--56440	6	6.7	6	94	2	62	17	2	0	79	0.84
57047--57092	2	23.0	2	100	0	92	50	0	0	50	1.00
66563--66626	20	3.2	20	80	8	67	43	14	7	34	1.74
66563--66613	21	2.5	21	84	9	61	47	13	7	31	1.72
70391--70417	13	2.1	13	100	0	54	29	14	14	40	1.86
70507--70531	13	1.9	13	100	0	50	36	16	16	32	1.90
70487--70551	33	2.0	32	85	11	87	35	15	16	32	1.91
76646--76702	20	2.8	20	87	7	80	38	12	21	28	1.89
78168--78246	27	2.9	27	74	7	79	55	12	3	27	1.54
78451--78490	20	2.0	20	100	0	80	40	5	5	50	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86899--86935	3	12.3	3	100	0	74	35	0	0	64	0.94
87297--87330	18	1.9	18	88	5	52	50	5	2	41	1.42
89673--89732	13	5.1	13	73	22	69	28	15	15	41	1.86
89657--89752	33	3.0	31	86	8	129	30	18	13	37	1.90
91760--92054	150	2.0	150	99	0	581	38	18	15	27	1.91
92354--92379	13	2.0	13	100	0	52	30	15	15	38	1.88
94458--94496	20	1.9	20	84	5	51	10	25	43	20	1.83
94940--94977	13	2.9	13	96	0	67	31	15	18	34	1.92
95179--95210	8	4.0	8	95	0	55	62	21	0	15	1.32
97066--97096	15	2.1	15	93	0	53	12	22	16	48	1.80
101163--101188	13	2.0	13	100	0	52	30	15	15	38	1.88
101143--101206	32	2.0	33	87	3	94	28	12	15	43	1.83
105799--105854	29	1.9	29	96	0	103	21	26	14	37	1.92
110479--110528	13	4.0	13	76	7	50	78	10	4	8	1.09
110479--110528	19	2.6	19	81	15	59	78	10	4	8	1.09
111805--111881	27	2.7	28	84	8	93	24	25	12	36	1.92
111847--111916	36	2.0	35	88	2	104	28	30	14	27	1.95
111819--111938	63	1.9	63	91	0	195	27	28	13	30	1.94
111883--112042	28	5.8	27	72	10	126	24	31	16	28	1.96
111951--112820	28	29.8	28	80	6	767	28	30	17	22	1.97
112098--112418	32	10.5	32	79	7	181	31	30	16	21	1.96
112083--112206	64	2.0	64	85	6	173	33	27	18	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111970--112820	208	4.2	207	84	6	825	29	30	17	22	1.97
111951--112808	173	4.9	171	80	7	732	28	30	17	22	1.97
112968--113077	48	2.3	48	93	0	193	20	30	17	31	1.95
120523--120579	29	2.0	29	89	0	87	17	21	31	29	1.96
120643--120751	48	2.3	48	88	0	155	35	13	28	22	1.92
120858--122422	28	55.4	28	81	8	983	24	16	30	27	1.97
120858--122422	56	27.7	57	83	8	1102	24	16	30	27	1.97
121190--121224	17	2.0	18	94	5	63	25	5	40	28	1.78
121159--121251	47	1.9	48	89	8	145	21	16	33	29	1.95
121206--121900	203	3.4	204	85	4	884	23	18	29	28	1.97
121615--122497	55	15.8	56	85	4	940	26	15	31	26	1.96
121850--122497	248	2.6	247	89	1	949	28	14	31	25	1.95
123542--123569	11	2.5	11	100	0	56	0	0	7	92	0.37
123861--123905	23	1.9	24	90	4	74	4	11	8	75	1.17
123862--123911	23	2.2	23	85	7	66	6	12	8	74	1.22
130173--130201	14	2.1	14	100	0	58	6	20	0	72	1.07
130550--130601	27	1.9	28	84	7	72	11	40	0	48	1.40
131354--131432	38	2.1	38	97	0	149	53	5	8	32	1.54
134280--134312	17	1.9	17	93	0	57	42	0	3	54	1.15
134950--134996	20	2.4	20	82	3	60	34	17	12	36	1.87
134941--134995	19	2.8	19	83	2	65	32	16	10	40	1.83
135026--135090	33	2.0	32	85	11	87	35	15	18	30	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
135046--135070	13	1.9	13	100	0	50	32	16	20	32	1.94
135984--136026	16	2.7	16	81	0	59	32	0	0	67	0.91
140535--140583	21	2.3	21	82	6	55	48	2	0	48	1.12
146562--146627	33	2.0	33	96	0	123	62	0	4	33	1.16
146940--147014	38	2.0	38	100	0	150	52	10	13	24	1.72
151769--152102	174	1.9	174	86	1	481	32	18	14	33	1.91
152573--152617	22	2.0	23	83	12	58	48	0	11	40	1.39
153475--153592	13	9.2	13	67	18	68	45	1	4	48	1.32
153476--153531	19	2.8	19	76	7	58	48	0	3	48	1.19
153509--153591	18	4.5	19	71	16	59	46	2	3	46	1.33

Tables:   1   2   3