Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1396
Parameters: 2 7 7 80 10 50 1000
Length:  309291

Tables:   1   2   3   

This is table  3  of  3  ( 299 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
245337--245403
14
4.8
14
69
20
50
41
0
0
58
0.98
250274--250305
3
10.7
3
100
0
64
65
0
0
34
0.93
250763--250804
3
14.0
3
100
0
84
66
0
0
33
0.92
251376--251408
8
4.1
8
96
0
57
33
0
0
66
0.92
251779--251831
25
2.3
23
84
15
67
35
1
0
62
1.06
252385--252409
12
2.1
12
100
0
50
16
32
36
16
1.90
252769--252807
20
2.0
20
94
0
69
30
2
2
64
1.21
252809--252866
26
2.3
26
85
14
77
62
3
0
34
1.12
254564--254589
13
2.0
13
100
0
52
30
15
15
38
1.88
257092--257130
13
3.0
13
96
0
69
35
15
17
30
1.91
257116--257154
20
2.0
20
94
0
69
51
10
15
23
1.73
261037--261081
21
2.1
21
84
8
56
22
20
4
53
1.63
263295--263320
13
2.0
13
100
0
52
30
15
15
38
1.88
265381--265455
20
3.8
20
78
0
87
34
13
12
40
1.81
265381--265458
40
2.0
39
87
2
111
34
12
12
39
1.82
266365--266420
22
2.5
23
91
5
96
17
8
8
64
1.48
269583--269657
20
3.8
20
78
0
87
34
13
12
40
1.81
269583--269660
40
2.0
39
87
2
111
34
12
12
39
1.82
279430--280344
456
2.0
456
98
0
1767
34
20
22
21
1.96
284103--284148
10
4.5
10
88
2
65
86
6
4
2
0.75
285350--286265
28
31.9
29
88
3
1283
28
31
17
22
1.96
285350--286265
57
16.0
57
87
4
1246
28
31
17
22
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
286753--286827
20
3.8
20
78
0
87
34
13
12
40
1.81
286753--286830
40
2.0
39
87
2
111
34
12
12
39
1.82
291619--291657
20
2.0
20
85
10
53
51
0
0
48
1.00
292822--292855
14
2.5
14
90
4
52
41
0
0
58
0.98
292820--292872
22
2.3
23
81
15
56
39
0
1
58
1.09
293317--293366
20
2.7
19
85
11
61
40
2
0
58
1.10
293351--293392
21
2.0
21
86
13
61
50
0
0
50
1.00
293344--293394
20
2.6
20
80
20
63
47
0
0
52
1.00
293354--293400
21
2.2
21
78
14
53
51
0
0
48
1.00
293513--293557
16
2.8
16
89
0
72
33
4
0
62
1.15
293617--293672
16
3.6
16
80
4
69
33
5
8
51
1.56
293620--293661
15
2.7
16
85
7
59
35
7
7
50
1.57
295777--295820
13
3.5
13
81
3
54
45
2
2
50
1.27
295809--295852
18
2.5
17
85
3
61
56
0
0
43
0.99
295815--295866
26
2.0
26
85
11
70
57
0
0
42
0.98
297299--297327
14
2.0
15
93
6
51
62
0
6
31
1.22
297615--297676
17
3.7
19
70
27
59
45
0
0
54
0.99
297612--297676
32
2.0
33
90
3
105
46
0
0
53
1.00
297602--297669
16
4.2
17
74
20
65
44
0
0
55
0.99
297679--297709
2
15.5
2
100
0
62
48
0
0
51
1.00
297619--297694
32
2.4
31
80
6
89
46
0
1
52
1.08
301855--301888
6
6.0
6
86
13
54
85
14
0
0
0.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
301855--301888
11
3.0
12
87
12
54
85
14
0
0
0.60
301857--301888
16
1.9
17
93
6
57
87
12
0
0
0.54
301856--301890
10
3.3
10
92
8
52
88
11
0
0
0.51
303253--303307
24
2.3
23
81
15
67
50
0
1
47
1.11
303242--303272
2
15.5
2
100
0
62
48
0
0
51
1.00
303667--303708
22
1.9
22
90
9
68
59
0
0
40
0.97
304583--304619
14
2.4
16
82
17
51
51
0
0
48
1.00
304620--304681
33
1.9
32
90
3
97
38
0
1
59
1.07
304887--304952
6
11.3
6
75
18
59
37
0
0
62
0.96
304878--304951
33
2.3
33
83
2
96
39
0
0
60
0.97
304889--304949
29
2.2
27
88
5
86
39
0
0
60
0.97
305228--305267
21
1.9
21
85
10
55
62
0
0
37
0.95
308079--308111
15
2.4
14
85
14
50
51
0
6
42
1.26
308578--308627
20
2.5
20
80
0
64
30
6
14
50
1.66
308635--308681
18
2.5
20
80
13
55
42
2
8
46
1.46

Tables:   1   2   3

The End!