genome.fa.s1448.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1448
Parameters: 2 7 7 80 10 50 1000
Length:  1297309

Tables:   1   2   3   

This is table  2  of  3  ( 300 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
914851--915088	31	7.7	31	91	3	374	25	31	17	25	1.97
914848--915151	93	3.3	94	86	6	397	24	31	16	27	1.96
915099--915549	34	13.6	33	83	11	473	21	34	12	31	1.91
915073--915549	134	3.6	129	82	11	526	21	34	12	31	1.91
915429--915520	27	3.1	27	77	20	103	22	34	14	28	1.93
915398--915520	62	2.0	62	90	3	194	21	35	13	28	1.92
915011--915561	34	16.8	33	80	10	406	20	33	13	32	1.91
915455--915559	35	3.0	34	81	10	122	20	34	11	34	1.88
915628--916094	49	9.7	49	83	6	580	24	25	17	31	1.97
915628--916160	98	5.4	98	89	5	730	24	25	17	32	1.97
915872--916050	43	4.0	44	82	9	227	25	25	19	29	1.98
915824--916094	92	2.9	92	94	1	461	25	24	18	31	1.98
916008--916383	55	6.7	55	74	12	302	24	23	14	36	1.93
916008--916394	170	2.3	164	92	4	648	24	24	14	36	1.93
916276--916395	60	2.0	61	85	1	161	24	24	13	38	1.91
917191--917260	33	2.1	33	89	0	104	34	11	14	40	1.82
917211--917235	13	1.9	13	100	0	50	36	16	16	32	1.90
917300--917324	13	1.9	13	100	0	50	32	16	16	36	1.90
917333--917461	52	2.5	52	92	0	213	37	17	15	30	1.90
926976--927094	42	2.8	42	88	0	175	8	44	2	44	1.47
926991--927061	18	3.6	18	69	20	52	9	42	2	45	1.52
927842--927886	19	2.7	15	76	23	54	6	11	6	75	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
927844--927882	19	2.1	19	100	0	78	5	10	5	79	1.04
930553--930577	10	2.5	10	100	0	50	44	0	12	44	1.41
931434--932192	393	1.9	395	79	5	849	35	15	18	30	1.92
934198--934223	2	13.0	2	100	0	52	50	0	0	50	1.00
935016--935095	28	2.9	27	71	17	74	11	21	8	58	1.59
946475--946581	42	2.5	42	90	0	169	10	45	2	41	1.53
946486--946563	9	9.0	9	69	8	54	10	43	2	43	1.52
946486--946560	18	3.8	18	71	19	60	10	42	2	44	1.53
946475--946593	42	2.8	42	88	0	139	9	45	2	42	1.49
948589--949060	158	3.0	161	81	5	491	30	19	14	35	1.92
949626--949845	111	2.0	110	83	5	273	29	16	16	37	1.90
949734--951450	779	2.2	774	81	5	1953	30	18	14	36	1.91
956554--956621	12	5.9	12	69	22	56	11	45	0	42	1.40
956521--956600	42	1.9	42	89	0	124	12	41	0	46	1.42
956549--956621	33	2.2	33	92	0	119	12	43	0	43	1.42
958391--958464	29	2.6	29	91	0	121	22	28	18	29	1.98
966723--966839	58	2.0	58	88	0	171	27	22	18	31	1.97
967594--967658	26	2.4	28	75	14	73	66	9	13	10	1.45
968700--971339	159	16.9	153	68	13	823	31	18	13	36	1.90
970113--972836	469	5.8	466	75	8	2197	30	19	13	36	1.91
971549--972291	153	4.8	154	70	11	467	31	18	14	35	1.91
975199--975491	159	1.9	156	80	6	349	32	19	11	35	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
975969--976336	158	2.4	151	79	9	385	30	20	13	35	1.91
976031--976422	158	2.5	156	79	8	409	29	19	15	35	1.93
976031--978125	159	13.4	159	70	13	578	30	19	14	35	1.92
977488--977767	152	1.8	152	78	7	318	31	17	14	36	1.90
976098--980012	774	5.1	764	77	10	3197	30	19	14	35	1.92
979781--980150	152	2.4	152	81	2	404	29	18	15	35	1.92
979871--980182	151	2.1	152	85	0	428	29	16	16	37	1.91
979888--980222	151	2.2	152	80	1	377	31	18	14	35	1.91
991109--991366	103	2.5	103	87	1	358	28	27	12	31	1.93
999582--999700	42	2.8	42	92	0	193	8	46	2	42	1.47
999615--999690	12	6.9	11	75	15	52	9	48	2	39	1.49
999606--999691	24	3.8	24	72	17	85	10	45	2	41	1.51
999597--999667	18	3.6	18	69	20	52	9	43	2	43	1.52
1002806--1002860	26	2.1	27	89	3	85	21	12	36	29	1.91
1002811--1002867	27	2.2	26	87	3	78	24	12	35	28	1.91
1005363--1005445	36	2.3	37	85	6	107	19	22	26	31	1.98
1005414--1005482	31	2.2	31	82	7	77	13	20	31	34	1.91
1005436--1005504	31	2.2	31	82	5	77	15	20	28	34	1.94
1005550--1005603	27	2.0	28	85	10	76	27	12	25	33	1.93
1005827--1005889	27	2.3	28	81	10	76	20	15	25	38	1.92
1005681--1005998	99	3.2	99	93	0	530	22	15	26	34	1.94
1005974--1006041	28	2.4	28	85	0	91	19	23	30	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1007862--1007993	42	3.1	42	87	2	185	44	2	44	8	1.46
1007871--1007956	24	3.8	24	69	17	76	43	2	44	10	1.51
1018638--1018756	42	2.8	42	92	0	193	8	46	2	42	1.47
1018671--1018746	12	6.9	11	75	15	52	9	48	2	39	1.49
1018662--1018747	24	3.8	24	72	17	85	10	45	2	41	1.51
1018653--1018723	18	3.6	18	69	20	52	9	43	2	43	1.52
1021233--1021533	151	1.9	155	81	8	364	29	18	15	35	1.92
1021280--1022002	160	4.7	153	74	10	415	30	19	14	35	1.92
1023712--1023752	2	20.5	2	100	0	82	48	0	0	51	1.00
1025962--1026195	100	2.3	100	97	0	432	29	14	13	41	1.85
1026042--1026097	20	2.8	20	94	0	94	32	16	8	42	1.79
1026142--1026195	20	2.7	20	85	2	63	33	14	9	42	1.78
1026992--1027648	318	2.1	316	80	9	721	31	19	13	35	1.91
1027204--1027890	317	2.2	311	80	8	718	32	20	13	33	1.92
1028606--1028893	160	1.8	159	79	11	338	30	18	14	37	1.90
1031769--1031966	63	3.1	63	97	0	378	33	27	17	22	1.96
1033341--1033641	162	1.8	164	85	2	419	39	19	14	26	1.90
1034418--1034476	20	3.0	20	78	9	75	28	22	13	35	1.92
1040611--1040690	30	2.7	30	92	3	126	8	45	3	42	1.53
1040636--1040675	21	1.9	21	89	0	62	10	42	2	45	1.51
1043833--1043867	13	2.7	13	86	0	52	37	14	17	31	1.89
1049549--1049599	20	2.6	20	78	3	59	33	19	11	35	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1051859--1052213	152	2.3	151	80	8	364	52	8	6	33	1.57
1053120--1053447	66	5.1	65	76	14	302	43	21	20	15	1.88
1053185--1053428	126	1.9	126	85	3	330	43	20	20	15	1.87
1053365--1053608	32	7.5	31	71	15	127	43	20	20	14	1.87
1053341--1053547	99	2.1	99	83	4	258	42	20	22	14	1.88
1053328--1053547	98	2.2	98	81	4	275	42	20	23	14	1.88
1053366--1053608	66	3.7	66	78	12	189	44	20	20	13	1.86
1053432--1053608	67	2.7	67	81	5	191	44	20	20	14	1.87
1054810--1054862	23	2.5	20	75	21	54	52	0	24	22	1.47
1062379--1062417	18	2.2	18	85	0	51	38	17	17	25	1.92
1068071--1068275	79	2.6	80	83	6	249	33	12	23	30	1.92
1081533--1081608	12	6.9	11	78	15	70	40	0	46	13	1.43
1081553--1081613	9	7.1	9	70	10	56	44	0	42	13	1.43
1081534--1081641	42	2.6	42	93	0	180	41	0	45	12	1.47
1081535--1081622	12	7.9	12	72	20	59	43	0	43	13	1.44
1090415--1090486	28	2.6	28	80	10	85	13	20	6	58	1.59
1093211--1093312	53	1.9	54	97	2	197	45	7	26	20	1.78
1098667--1099176	256	2.0	256	97	0	966	33	13	28	23	1.93
1100540--1100649	42	2.6	42	94	0	193	41	1	46	10	1.48
1100606--1100655	18	2.8	18	81	6	57	44	2	46	8	1.44
1102290--1102399	42	2.6	42	92	0	184	41	2	46	9	1.50
1109951--1110021	18	3.6	18	71	20	52	9	42	2	45	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1109936--1110043	42	2.6	42	90	0	180	9	46	2	41	1.50
1131869--1131929	9	7.1	9	81	10	74	11	39	0	49	1.39
1131839--1131959	42	2.9	41	75	8	111	12	40	0	47	1.41
1134853--1135146	157	1.9	158	82	5	380	31	17	15	35	1.91
1140158--1140190	12	2.8	12	86	13	50	39	0	48	12	1.40
1140177--1140237	9	6.1	9	78	17	59	45	0	40	13	1.43
1140180--1140250	18	3.6	18	72	20	61	46	0	40	12	1.42
1140158--1140265	42	2.6	42	89	0	171	42	0	44	12	1.47
1150294--1150371	20	3.8	19	74	14	75	43	10	14	32	1.78
1150942--1151106	86	1.9	87	87	1	242	23	26	20	29	1.99

Tables:   1   2   3