genome.fa.s1448.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1448
Parameters: 2 7 7 80 10 50 1000
Length:  1297309

Tables:   1   2   3   

This is table  3  of  3  ( 300 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1150987--1151255	118	2.3	117	84	1	369	21	24	24	30	1.99
1151192--1151286	31	3.1	31	86	4	129	13	24	32	29	1.93
1151074--1151436	149	2.4	149	86	0	483	19	22	27	30	1.98
1151346--1151833	31	15.9	31	73	8	265	18	22	28	30	1.97
1150993--1151920	274	3.4	272	83	4	1078	20	23	26	29	1.99
1151996--1152280	42	6.7	42	86	2	365	41	12	26	19	1.88
1151998--1152280	127	2.2	127	87	4	403	41	13	26	19	1.88
1152302--1152379	34	2.4	33	87	8	106	43	12	24	19	1.86
1161827--1162105	152	1.8	150	84	6	375	31	18	13	36	1.90
1169047--1169107	28	2.2	28	82	11	72	14	18	6	60	1.55
1175444--1175991	151	3.5	154	75	8	463	31	18	14	36	1.90
1175302--1175896	158	3.8	152	74	11	415	30	17	13	37	1.89
1184126--1184165	15	2.7	15	80	0	53	82	2	12	2	0.87
1184912--1184987	12	6.9	11	75	15	52	39	2	48	9	1.49
1184902--1185020	42	2.8	42	93	0	202	42	1	46	9	1.46
1184977--1185026	18	2.8	18	81	6	57	44	2	46	8	1.44
1191601--1191676	12	6.8	12	74	19	60	13	46	1	39	1.51
1191626--1191693	21	3.4	18	73	21	64	14	42	0	42	1.46
1191563--1191718	42	3.7	42	89	2	215	13	42	1	42	1.52
1194597--1194654	12	5.4	11	80	16	52	39	0	46	13	1.44
1194612--1194643	9	3.6	9	91	0	55	43	0	43	12	1.42
1194615--1194685	18	3.6	18	74	20	61	43	1	42	12	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1194594--1194700	42	2.5	42	89	0	169	40	1	46	11	1.50
1200606--1200681	12	6.9	11	78	15	61	39	1	48	10	1.46
1200596--1200686	33	2.8	30	77	12	76	43	1	45	9	1.44
1200626--1200686	9	7.1	9	72	10	56	42	1	44	11	1.50
1200596--1200714	42	2.8	42	90	0	184	42	1	46	9	1.46
1211559--1211690	42	3.1	42	89	2	185	44	2	44	8	1.46
1220596--1220665	9	8.1	9	78	9	74	12	42	0	44	1.42
1220568--1220656	42	2.1	42	91	0	142	11	44	1	42	1.47
1220596--1220695	51	2.0	51	89	0	155	11	42	1	46	1.46
1221660--1222944	638	2.0	643	91	3	2097	34	22	14	28	1.94
1223022--1227801	158	30.8	155	67	14	958	30	17	14	37	1.90
1222944--1227349	784	5.7	783	80	6	4216	30	18	14	37	1.90
1226750--1227658	466	2.0	463	82	6	1104	29	17	14	38	1.90
1228906--1229357	152	2.9	155	75	11	375	31	19	11	36	1.88
1228844--1229384	159	3.4	156	75	9	474	31	19	13	36	1.90
1228972--1229449	159	3.1	159	77	7	376	31	19	12	36	1.89
1234524--1234573	12	4.4	12	73	14	52	38	2	46	14	1.56
1234521--1234593	33	2.2	33	87	0	101	41	1	42	15	1.55
1239824--1239938	42	2.7	42	89	0	167	45	2	43	8	1.48
1250970--1251411	157	2.8	158	73	6	385	35	13	20	30	1.91
1250735--1253644	744	3.8	751	76	11	2479	36	14	18	30	1.91
1256514--1256781	138	1.9	138	83	4	344	30	17	16	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1257587--1261767	778	5.3	777	77	6	3794	30	17	14	36	1.90
1256743--1261605	158	31.1	157	68	12	1458	30	17	14	37	1.90
1260411--1261178	308	2.5	309	79	9	742	31	18	14	35	1.91
1261727--1261846	39	3.1	39	100	0	240	38	13	15	33	1.86
1265175--1265251	30	2.6	30	89	4	111	44	3	44	7	1.51
1275606--1275687	9	9.8	9	69	19	61	13	40	0	46	1.43
1275601--1275694	24	4.1	24	70	21	76	12	38	0	48	1.41
1275587--1275696	42	2.6	42	88	0	157	12	40	0	47	1.42
1278345--1278631	151	1.9	151	82	5	357	28	16	16	38	1.90
1278198--1280715	782	3.2	768	75	8	2177	31	17	13	37	1.89
1282699--1282976	153	1.8	150	83	5	371	32	17	14	36	1.89
1280631--1283666	777	3.9	765	77	8	2401	30	17	14	37	1.89
1284348--1285571	159	7.8	158	68	14	403	30	16	14	37	1.89
1288057--1290822	159	17.5	158	71	9	1427	38	12	18	30	1.87
1289713--1290822	316	3.5	313	78	7	923	39	11	18	30	1.87
1291916--1291996	28	2.9	28	81	1	99	13	12	11	62	1.54

Tables:   1   2   3

The End!