genome.fa.s149.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold149
Parameters: 2 7 7 80 10 50 1000
Length:  533615

Tables:   1   2   3   

This is table  2  of  3  ( 321 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
133689--133845	75	2.1	75	86	0	224	19	36	35	8	1.83
133766--133910	60	2.4	59	94	1	245	20	37	33	9	1.85
133631--133899	135	2.0	135	88	0	403	18	36	34	9	1.83
134229--134262	2	17.0	2	93	0	59	50	2	0	47	1.16
134262--134290	2	14.5	2	100	0	58	51	0	48	0	1.00
134551--134606	20	2.8	19	79	15	60	66	5	3	25	1.29
135212--135243	17	1.9	16	93	6	55	65	0	0	34	0.93
139026--139063	20	1.9	19	89	5	58	39	2	0	57	1.12
271244--271290	21	2.1	22	88	7	69	68	0	2	29	1.02
271223--271290	26	2.5	27	80	7	84	67	0	1	30	0.99
271245--271288	11	4.2	11	80	8	56	65	0	2	31	1.05
272890--272916	3	9.0	3	100	0	54	33	0	33	33	1.58
274050--274078	6	4.8	6	100	0	58	13	0	0	86	0.58
275503--275626	22	5.8	22	72	17	100	49	1	2	46	1.24
275620--275659	20	2.1	18	86	9	53	40	0	5	55	1.22
278959--279021	32	2.0	32	87	6	92	26	26	28	17	1.98
280018--280075	13	4.4	13	86	2	80	46	5	1	46	1.35
280018--280075	2	27.5	2	79	10	62	46	5	1	46	1.35
281022--281073	22	2.4	22	87	3	70	34	21	5	38	1.77
282540--282589	24	2.1	24	88	0	73	38	18	36	8	1.80
285438--285697	50	5.2	50	91	0	414	31	20	19	29	1.97
289236--289310	20	3.8	20	78	0	87	34	13	12	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
289236--289313	40	2.0	39	87	2	111	34	12	12	39	1.82
292777--293238	32	14.4	32	93	0	755	16	18	33	31	1.93
298217--298241	13	1.9	13	100	0	50	36	16	16	32	1.90
298304--298328	13	1.9	13	100	0	50	32	16	16	36	1.90
298337--298517	52	3.5	52	98	0	344	34	19	17	28	1.95
303093--303159	33	2.0	33	88	0	98	34	11	13	40	1.81
303113--303137	13	1.9	13	100	0	50	36	16	16	32	1.90
303202--303226	13	1.9	13	100	0	50	32	16	16	36	1.90
303235--303355	52	2.3	52	97	0	224	34	18	18	28	1.94
307340--307375	17	2.1	17	89	0	54	83	0	16	0	0.65
314387--314422	17	2.1	17	89	0	54	83	0	16	0	0.65
318088--318282	50	3.9	50	95	0	354	31	20	20	28	1.97
318548--318593	16	2.8	16	86	6	56	34	2	0	63	1.07
318900--318925	3	8.7	3	100	0	52	69	0	0	30	0.89
320303--320419	60	2.0	60	89	0	180	35	11	17	35	1.86
322401--322585	34	5.5	34	86	3	248	40	25	7	26	1.82
326994--327176	34	5.4	34	87	3	253	39	26	7	25	1.83
328420--328465	18	2.5	18	80	16	58	21	10	0	67	1.21
328575--328790	34	6.4	34	85	1	247	27	7	23	41	1.81
328603--328790	102	1.9	101	89	1	295	27	8	23	40	1.83
333202--333420	34	6.5	34	86	2	271	26	7	26	40	1.83
333202--333420	102	2.2	101	88	3	332	26	7	26	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
338412--338463	21	2.4	22	80	9	70	57	1	3	36	1.28
339058--339093	16	2.2	16	90	9	56	55	2	0	41	1.14
342616--342662	12	3.7	13	81	13	53	34	0	2	63	1.06
342619--342659	11	3.4	12	83	16	50	34	0	2	63	1.08
343318--343365	24	2.0	24	84	8	62	35	0	6	58	1.23
343458--343580	41	3.2	41	61	32	99	35	1	12	50	1.50
343721--343832	32	3.3	32	66	20	91	32	2	12	52	1.53
343753--343871	39	3.2	39	66	20	119	35	2	8	53	1.45
343183--345100	73	26.6	72	82	5	1867	32	2	11	53	1.49
343191--345100	145	13.2	145	81	6	1830	32	2	11	53	1.49
344322--344445	40	3.3	40	63	19	102	33	0	10	54	1.40
344684--344806	40	3.3	39	65	24	109	32	3	10	53	1.51
344846--344900	25	2.2	26	77	6	60	32	5	9	52	1.56
345316--345346	15	2.1	15	100	0	62	32	25	0	41	1.56
347508--347834	72	4.5	71	80	12	355	32	0	12	54	1.44
347755--347872	41	2.7	42	87	9	132	36	0	11	52	1.37
347508--347834	146	2.2	146	85	6	423	32	0	12	54	1.44
347785--347875	41	2.2	41	96	0	164	34	0	10	54	1.35
347783--347850	21	3.3	21	64	25	54	36	0	11	51	1.39
347792--347855	19	3.2	19	65	26	51	29	0	12	57	1.35
347711--347947	113	2.1	112	83	5	298	33	1	10	54	1.44
347825--348007	73	2.5	73	84	5	226	30	3	10	55	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
347825--348007	72	2.5	74	84	3	228	30	3	10	55	1.49
347639--348007	186	2.0	185	87	3	526	31	2	11	54	1.47
348459--348666	71	2.9	70	83	7	242	34	0	12	52	1.45
348459--348666	72	2.9	73	80	11	243	34	0	12	52	1.45
348848--348890	21	2.1	21	83	8	54	30	0	16	53	1.43
348869--349365	72	6.9	71	75	8	360	30	3	14	51	1.57
348883--349239	146	2.5	145	78	5	362	32	3	14	49	1.60
361496--361614	38	3.1	38	87	0	166	30	31	12	26	1.93
366171--366322	38	4.0	38	81	1	126	30	28	13	28	1.94
368411--368474	28	2.3	28	84	10	78	39	4	4	51	1.44
370259--370334	24	3.2	24	86	0	107	9	36	13	40	1.76
371920--371962	20	2.2	20	87	4	61	9	13	13	62	1.53
372256--372447	106	1.8	106	98	0	375	55	6	5	32	1.49
372459--372501	23	1.9	22	90	4	68	41	4	2	51	1.35
372464--372518	23	2.5	22	80	11	58	49	3	3	43	1.37
372955--372984	15	2.0	15	93	0	51	56	0	3	40	1.16
374081--374123	22	2.0	22	85	0	59	46	25	0	27	1.53
376621--376692	34	2.2	33	82	7	85	37	4	4	54	1.39
381068--381118	23	2.2	24	82	3	59	37	1	9	50	1.47
381079--381123	23	2.0	23	86	8	65	37	4	4	53	1.41
382591--382631	2	21.0	2	95	5	75	51	0	0	48	1.00
383276--383308	16	2.1	16	88	11	50	54	12	6	27	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
386857--386934	28	2.9	27	87	9	106	23	5	23	48	1.70
389485--389530	21	2.1	22	84	4	58	30	19	30	19	1.97
391376--391412	19	1.9	19	94	0	65	13	13	35	37	1.84
391432--391486	28	2.0	28	100	0	110	18	10	21	49	1.78
391468--391536	24	2.8	24	82	4	75	21	5	26	46	1.74
394623--394870	82	3.0	82	91	0	388	29	22	13	34	1.92
395343--395388	24	1.9	24	90	0	74	43	28	6	21	1.77
395369--395446	28	2.9	28	86	7	99	48	23	6	21	1.73
395393--395447	28	2.0	28	100	0	110	49	21	10	18	1.78
395467--395503	19	1.9	19	94	0	65	37	35	13	13	1.84
397342--397387	21	2.1	22	84	4	58	19	30	19	30	1.97
399909--399954	24	1.9	24	86	0	65	43	30	6	19	1.76
399935--400012	28	2.9	28	86	7	99	48	23	6	21	1.73
399959--400013	28	2.0	28	100	0	110	49	21	10	18	1.78
405080--405128	14	2.9	17	77	22	59	63	2	0	34	1.06
405088--405131	13	3.3	13	87	6	61	63	2	0	34	1.07
405063--405128	32	2.0	35	82	14	86	60	3	1	34	1.21
405279--405328	18	2.9	17	79	5	55	40	4	0	56	1.18
405308--405394	38	2.4	37	83	9	99	47	0	0	52	1.00
405322--405444	38	3.2	36	76	17	106	43	0	0	55	1.05
405395--405442	24	2.0	25	87	4	71	37	2	0	60	1.09
405322--405446	57	2.2	58	80	11	141	43	0	0	56	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
405342--405448	29	3.8	28	73	9	92	40	0	0	58	1.04
406314--406422	13	8.1	13	70	15	60	33	1	0	65	1.04
406340--406437	26	4.2	24	77	13	89	28	2	0	69	1.00
406359--406443	44	1.9	44	88	9	129	28	2	0	69	1.01
406362--406430	11	5.7	11	77	15	66	24	1	0	73	0.91
406341--406435	13	7.2	14	74	19	73	27	2	0	70	0.98
406746--406785	16	2.5	16	95	0	71	60	2	5	32	1.32
406984--407027	23	1.9	23	81	9	54	43	6	0	50	1.29
407979--408731	394	1.9	394	90	1	1188	40	6	22	30	1.80
410975--411017	20	2.2	20	87	8	61	72	2	6	18	1.19

Tables:   1   2   3