genome.fa.s149.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold149
Parameters: 2 7 7 80 10 50 1000
Length:  533615

Tables:   1   2   3   

This is table  3  of  3  ( 321 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
411341--411426	29	3.0	28	85	10	120	37	3	0	59	1.15
411755--411788	8	4.0	9	85	14	54	67	0	8	23	1.18
411755--411788	17	2.0	17	94	0	59	67	0	8	23	1.18
412711--412825	31	3.7	31	84	0	149	33	24	13	27	1.93
417674--417717	21	2.1	21	91	8	72	36	0	0	63	0.95
418202--418352	34	4.5	34	88	0	223	25	6	27	41	1.80
418659--418721	19	3.3	19	90	0	90	28	17	19	34	1.94
422787--422937	34	4.5	34	88	0	223	25	6	27	41	1.80
426218--426250	2	17.0	2	93	6	59	51	0	0	48	1.00
429416--429457	15	2.8	15	75	13	50	59	2	2	35	1.23
432218--432503	71	4.1	70	78	8	253	31	3	10	55	1.50
432207--432461	139	1.8	138	82	6	316	32	3	10	53	1.52
432480--432519	21	1.9	21	90	10	64	32	0	12	55	1.38
438238--438484	98	2.6	95	80	10	243	29	21	12	37	1.89
442763--442880	27	4.2	27	75	11	94	34	0	0	63	1.06
444719--444759	21	2.0	20	85	4	55	48	0	0	51	1.00
444719--444777	18	3.1	19	71	28	54	47	0	0	52	1.00
444791--444865	27	2.7	28	77	10	82	26	4	2	66	1.22
446474--446503	15	1.9	16	93	6	53	50	13	3	33	1.58
448676--448702	2	13.5	2	100	0	54	51	0	0	48	1.00
450820--451039	111	2.0	112	95	0	397	35	11	15	37	1.84
451141--451465	163	2.0	157	86	4	454	31	13	11	43	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
451979--452027	21	2.3	21	75	10	55	53	0	2	44	1.12
451990--452049	29	2.0	30	87	9	88	56	3	1	38	1.26
452227--452275	2	25.0	2	84	12	66	48	2	2	46	1.25
454479--454527	20	2.4	20	80	10	55	40	12	14	32	1.83
454592--454724	51	2.6	52	83	5	171	29	17	11	42	1.84
456622--456699	38	2.1	38	97	0	147	28	15	21	34	1.94
458248--458272	1	25.0	1	100	0	50	100	0	0	0	0.00
460871--461210	72	4.7	73	76	9	324	54	9	3	33	1.48
461155--461280	60	2.1	60	92	0	207	50	9	0	38	1.40
461081--461338	133	2.0	130	83	6	322	50	9	2	37	1.50
464521--464598	28	2.9	28	86	7	99	24	5	20	50	1.68
464556--464620	24	2.6	25	80	4	69	26	4	21	47	1.70
465872--465996	60	2.1	60	90	1	198	50	9	0	39	1.41
465798--466054	132	2.0	133	82	5	326	50	10	2	36	1.50
465946--466091	70	2.1	71	81	8	165	56	6	0	36	1.31
466555--466605	25	2.0	26	88	3	77	58	5	0	35	1.22
466513--466705	74	2.7	73	89	4	286	53	9	0	36	1.37
467130--467320	74	2.6	74	76	9	171	51	8	1	38	1.43
467471--467569	50	2.0	49	84	2	126	29	18	22	30	1.97
470479--470534	18	3.1	18	92	0	94	25	19	28	26	1.99
471172--471382	117	1.8	117	81	6	266	33	10	10	44	1.75
473133--473173	5	8.0	5	86	2	55	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
473132--473172	10	4.0	10	90	3	64	48	0	0	51	1.00
473133--473173	20	2.0	21	95	4	75	46	0	0	53	1.00
473145--473289	50	2.9	51	76	18	135	51	0	0	48	1.00
473892--473934	18	2.4	17	81	11	50	32	0	4	62	1.15
474267--474313	23	2.0	23	88	8	69	61	0	0	38	0.96
474347--474400	25	2.2	24	83	12	65	68	5	1	24	1.21
475577--475653	27	2.8	28	73	13	79	64	0	2	32	1.07
475577--475664	28	3.1	28	73	12	74	62	0	2	35	1.08
475673--475721	13	3.6	13	81	8	53	51	0	0	48	1.00
475776--475946	92	1.9	90	82	4	218	29	19	16	35	1.93
476245--476276	14	2.3	14	94	0	55	28	0	3	68	1.04
480390--480418	6	4.8	6	100	0	58	13	0	0	86	0.58
481840--481906	22	3.2	21	85	6	91	50	0	1	47	1.10
487633--487696	28	2.3	29	81	10	80	48	4	3	43	1.39
488571--488703	71	1.9	71	85	6	189	33	13	12	40	1.83
493066--493146	25	3.5	24	75	16	89	39	0	3	56	1.17
493074--493139	20	3.0	20	80	18	78	37	0	3	59	1.13
493073--493124	14	3.9	14	73	17	56	38	0	3	57	1.17
494832--494861	11	2.9	10	90	9	51	86	0	13	0	0.57
495242--495340	20	4.8	20	83	3	108	32	17	15	35	1.91
500732--500815	19	4.7	19	80	16	108	30	11	16	40	1.85
500734--500796	32	2.0	32	93	0	108	31	12	17	38	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
500753--500777	13	1.9	13	100	0	50	36	16	16	32	1.90
500868--500892	13	1.9	13	100	0	50	32	16	16	36	1.90
504535--504560	13	2.0	13	100	0	52	38	15	15	30	1.88
504517--504580	32	2.0	33	90	3	103	39	18	14	28	1.90
510746--510784	13	3.0	13	96	0	69	30	17	15	35	1.91
510906--510952	21	2.3	20	82	10	60	31	19	4	44	1.70
511059--511083	13	1.9	13	100	0	50	36	16	8	40	1.77
513319--513344	13	2.0	13	100	0	52	38	15	15	30	1.88
513301--513365	32	2.0	32	87	6	94	40	18	13	27	1.89
519788--519850	33	1.9	33	100	0	126	25	36	15	22	1.94
522810--523742	27	33.6	28	85	4	835	26	30	14	28	1.95
523400--523444	23	2.0	23	95	0	81	20	40	11	28	1.86
523505--524536	28	36.2	28	85	3	1161	30	29	17	22	1.97
523964--524032	36	1.9	36	96	0	129	30	28	18	21	1.97
531940--532120	38	4.7	38	75	4	114	39	17	14	28	1.89

Tables:   1   2   3

The End!