genome.fa.s1611.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1611
Parameters: 2 7 7 80 10 50 1000
Length:  379729

Tables:   1   2   3   

This is table  3  of  3  ( 290 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
342026--342094	22	3.2	22	63	19	54	26	26	17	30	1.97
342070--342218	52	2.8	54	80	3	176	26	23	16	34	1.95
342235--342338	49	2.1	49	85	0	136	25	23	16	35	1.95
342070--342464	171	2.3	171	93	1	673	24	24	13	36	1.92
343253--343319	33	2.0	33	88	0	98	34	11	13	40	1.81
343273--343297	13	1.9	13	100	0	50	36	16	16	32	1.90
343363--343387	13	1.9	13	100	0	50	32	16	16	36	1.90
343396--343516	52	2.3	52	97	0	224	34	18	18	28	1.94
350752--350781	1	30.0	1	93	0	51	96	0	3	0	0.21
351723--352382	61	10.3	63	74	16	440	20	34	13	31	1.91
351749--352245	125	3.9	125	84	8	551	21	36	13	28	1.92
351871--351949	27	2.9	27	98	0	149	24	40	17	17	1.91
351714--352382	34	20.9	33	78	14	456	20	34	13	31	1.91
351898--352216	98	3.3	96	81	13	368	20	35	13	29	1.92
351898--352350	97	4.7	97	81	10	395	20	34	13	32	1.91
351922--352219	63	4.6	63	83	10	341	20	35	13	31	1.90
352219--352272	27	2.0	27	92	0	90	22	37	14	25	1.93
352248--352382	35	3.9	34	81	9	146	18	30	12	38	1.88
352247--352389	36	4.1	34	80	7	144	17	32	11	38	1.86
352253--352402	71	2.1	70	82	6	178	20	33	12	34	1.89
352387--352456	33	2.1	35	94	5	126	25	37	17	20	1.94
352456--354106	49	33.9	49	83	3	2017	24	26	17	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
352451--354039	98	16.4	98	94	1	2305	24	27	17	30	1.97
353910--353978	22	3.2	22	63	19	54	26	26	17	30	1.97
353954--354102	52	2.8	54	80	3	176	26	23	16	34	1.95
354119--354222	49	2.1	49	85	0	136	25	23	16	35	1.95
353954--354348	171	2.3	171	93	1	673	24	24	13	36	1.92
355137--355203	33	2.0	33	88	0	98	34	11	13	40	1.81
355157--355181	13	1.9	13	100	0	50	36	16	16	32	1.90
355247--355271	13	1.9	13	100	0	50	32	16	16	36	1.90
355280--355400	52	2.3	52	97	0	224	34	18	18	28	1.94
358513--358553	15	2.7	16	81	14	59	43	0	0	56	0.99
360840--360874	17	2.0	17	88	5	52	37	2	5	54	1.39
361254--361800	155	3.5	152	72	10	376	41	20	13	24	1.88
363249--363284	16	2.2	17	90	5	56	19	22	13	44	1.86
363293--363330	13	2.9	13	96	0	67	31	15	18	34	1.92
363402--363445	20	2.2	20	83	0	52	34	11	18	36	1.86
363801--363867	37	1.9	35	88	11	102	32	11	25	29	1.92
365736--365795	13	5.1	13	75	22	69	31	13	16	38	1.87
369584--369768	52	3.6	51	82	6	228	32	10	26	29	1.90
372124--372149	13	2.0	13	100	0	52	38	15	15	30	1.88
372103--372169	33	2.0	33	88	0	98	43	16	14	25	1.86
372189--372256	19	3.9	19	78	21	94	39	14	11	33	1.83
372211--372235	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
372192--372254	32	2.0	32	100	0	126	38	15	12	33	1.86
373001--374234	59	21.3	59	89	5	1593	24	20	28	26	1.99
373024--374208	172	6.9	169	88	5	1537	24	19	28	27	1.99
375223--375266	18	2.4	19	88	7	65	2	2	9	86	0.75
375217--375268	13	3.8	13	84	7	59	1	3	7	86	0.76
375217--375268	18	2.9	18	81	13	63	1	3	7	86	0.76

Tables:   1   2   3

The End!