genome.fa.s1688.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1688
Parameters: 2 7 7 80 10 50 1000
Length:  613586

Tables:   1   2   3   4   

This is table  4  of  4  ( 407 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
531879--531930	19	2.7	20	87	6	79	42	15	13	28	1.85
533120--533238	42	2.8	42	79	5	134	11	42	0	45	1.46
547997--548056	9	6.1	9	76	17	57	15	41	0	43	1.46
547984--548049	18	3.4	18	73	18	60	13	42	0	43	1.44
547968--548086	41	2.9	41	89	2	166	11	42	0	44	1.46
548002--548076	12	6.9	11	75	18	61	14	45	0	40	1.45
552890--552999	12	10.2	11	75	16	74	40	0	45	13	1.50
552907--552981	9	8.7	9	75	8	75	41	1	44	13	1.52
552902--552975	21	3.5	20	73	21	71	41	1	43	13	1.52
552890--553036	42	3.5	42	93	1	235	39	2	46	12	1.53
554994--555024	16	1.9	16	100	0	62	19	9	25	45	1.81
564852--564909	9	6.8	9	73	11	59	15	39	0	44	1.47
564854--564933	12	7.3	11	74	16	60	12	42	2	42	1.56
564824--564933	42	2.6	42	88	0	157	11	43	2	41	1.55
568964--569080	51	2.3	52	92	4	193	32	17	16	33	1.93
569089--569113	13	1.9	13	100	0	50	36	16	16	32	1.90
569167--569220	20	2.7	20	85	0	72	44	12	11	31	1.78
570377--570899	49	11.0	49	80	10	500	32	16	24	26	1.96
570447--570904	92	4.9	92	84	7	615	31	17	25	25	1.97
570743--570809	22	3.1	22	61	26	52	31	16	26	25	1.96
570892--570994	33	3.3	31	88	8	154	16	18	34	30	1.93
571005--571549	71	7.9	68	89	6	714	34	11	33	20	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
571005--571549	175	3.1	176	88	6	780	34	11	33	20	1.89
571003--571549	246	2.3	241	88	6	838	34	11	33	20	1.89
571460--571519	28	2.1	28	87	0	84	31	13	30	25	1.93
571425--571549	63	2.0	62	87	1	178	30	12	33	24	1.91
571536--571578	23	1.9	22	85	4	59	23	13	34	27	1.93
571555--571675	31	3.9	30	87	8	172	29	16	29	23	1.96
577789--577891	9	12.1	9	72	12	92	13	44	0	41	1.44
577794--577912	12	10.9	12	76	20	88	13	46	0	40	1.43
577760--577921	42	3.9	42	95	0	270	11	44	0	43	1.40
583361--583399	15	2.6	15	79	0	51	82	2	12	2	0.89
584146--584221	12	6.9	11	75	15	52	39	2	48	9	1.49
584145--584230	24	3.8	24	72	17	85	41	2	45	10	1.51
584136--584254	42	2.8	42	92	0	193	42	2	46	8	1.47
590553--590713	42	3.8	42	93	0	259	9	45	2	42	1.51
590586--590703	12	10.9	11	74	16	63	11	46	2	39	1.53
590568--590680	18	5.6	18	70	22	73	11	43	2	42	1.55
590581--590683	9	11.1	9	69	15	59	11	43	2	41	1.56
595739--595857	42	2.8	42	92	0	193	8	46	2	42	1.47
595772--595847	12	6.9	11	75	15	52	9	48	2	39	1.49
595763--595848	24	3.8	24	72	17	85	10	45	2	41	1.51
595754--595824	18	3.6	18	69	20	52	9	43	2	43	1.52
605079--605570	245	2.0	246	96	0	905	43	15	19	20	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
610295--610402	21	5.3	18	66	30	58	10	48	1	39	1.48
610298--610416	42	2.8	42	93	0	202	9	46	1	42	1.46
610331--610406	12	6.9	11	75	15	52	9	48	2	39	1.49

Tables:   1   2   3   4

The End!