genome.fa.s1750.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1750
Parameters: 2 7 7 80 10 50 1000
Length:  172274

Tables:   1   2   

This is table  1  of  2  ( 213 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1755--1832	28	2.9	28	83	7	90	23	5	21	50	1.69
1790--1858	24	2.8	24	82	4	75	21	5	26	46	1.74
12189--12214	13	2.0	13	100	0	52	30	15	15	38	1.88
14236--14295	15	4.1	15	73	22	56	41	0	0	58	0.98
14242--14310	22	3.5	20	73	19	65	39	0	0	60	0.97
14243--14306	30	2.2	31	86	8	89	39	0	0	60	0.97
14241--14292	23	2.4	22	83	6	70	40	0	0	59	0.97
17882--17931	27	1.9	27	88	8	77	46	2	0	52	1.12
17883--17942	27	2.4	25	78	10	59	50	1	0	48	1.11
17913--17973	21	2.9	20	86	13	79	63	0	0	36	0.94
18299--18354	24	2.3	24	90	6	87	42	1	0	55	1.10
18283--18329	18	2.6	19	80	6	53	44	0	2	53	1.12
18641--18685	2	22.5	2	100	0	90	0	48	0	51	1.00
19377--19543	75	2.2	75	95	0	298	22	17	15	44	1.86
22644--22682	18	2.2	18	86	9	53	53	0	2	43	1.14
23652--23678	8	3.4	8	100	0	54	11	0	0	88	0.50
25373--25397	13	1.9	13	100	0	50	24	16	20	40	1.91
27476--27519	17	2.8	16	83	10	63	47	0	0	52	1.00
27800--27824	6	4.2	6	100	0	50	68	0	0	32	0.90
27807--27888	21	4.0	21	65	17	55	47	2	1	48	1.22
27905--27954	14	3.5	14	81	10	57	42	2	0	56	1.11
27914--27956	14	3.0	14	83	6	59	37	0	0	62	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27914--27956	15	3.1	13	78	15	50	37	0	0	62	0.95
29721--30290	285	2.0	282	94	1	996	44	6	8	40	1.59
30594--30642	24	2.0	24	84	7	64	36	0	0	63	0.95
30165--31144	454	2.2	455	82	8	1151	41	5	6	45	1.55
32807--32840	6	5.8	6	93	6	52	0	26	0	73	0.83
32804--32840	11	3.3	11	88	7	56	0	24	0	75	0.80
32807--32840	17	1.9	18	88	5	52	0	26	0	73	0.83
33185--33272	23	3.8	22	76	18	74	35	0	1	63	1.02
34125--34160	17	2.1	18	89	5	56	41	5	2	50	1.40
38615--38645	15	2.0	16	93	6	55	51	3	0	45	1.17
39666--39690	2	12.5	2	100	0	50	52	0	0	48	1.00
40116--40140	2	12.5	2	100	0	50	52	0	0	48	1.00
41315--41341	2	13.5	2	100	0	54	48	0	0	51	1.00
41749--41828	26	3.1	25	76	16	74	50	3	2	43	1.33
41900--41929	2	15.0	2	100	0	60	50	0	0	50	1.00
42472--42563	24	3.7	23	76	18	71	28	0	0	71	0.86
42452--42581	11	10.9	11	70	28	56	29	0	0	70	0.93
43879--43903	13	1.9	13	100	0	50	44	0	0	56	0.99
43938--44977	73	14.5	73	79	8	976	34	2	10	52	1.48
43947--44981	218	4.8	214	82	6	1145	34	2	11	52	1.48
46500--46550	21	2.4	23	78	18	65	49	0	0	50	1.00
47096--47158	15	4.3	15	80	7	67	30	0	1	68	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47096--47152	11	5.5	11	82	12	68	29	0	1	68	1.00
47096--47144	20	2.4	21	86	10	75	30	0	2	67	1.02
47106--47157	18	2.8	18	85	5	59	28	0	0	71	0.87
47150--47184	18	1.9	18	88	0	52	48	0	0	51	1.00
47110--47173	30	2.1	31	82	8	78	34	0	0	65	0.93
47485--47573	29	3.0	30	77	12	78	51	1	0	47	1.08
47534--47631	48	2.1	48	84	9	130	44	1	0	54	1.07
48135--48185	17	2.8	17	82	11	66	62	0	0	37	0.95
48135--48225	18	4.9	18	74	17	71	58	0	0	41	0.98
48136--48213	40	2.0	40	82	5	95	60	0	0	39	0.97
48232--48287	23	2.4	23	85	11	71	60	0	3	35	1.14
49525--49565	19	2.0	21	90	9	68	46	0	0	53	1.00
49527--49576	19	2.6	19	74	22	59	50	0	0	50	1.00
50204--50271	30	2.3	30	85	7	86	47	1	0	51	1.09
50385--50422	19	2.1	18	85	14	51	60	0	0	39	0.97
50384--50464	24	3.3	24	84	6	92	56	0	0	43	0.99
51853--51936	33	2.5	33	98	0	159	32	14	30	22	1.94
52638--52667	3	10.0	3	92	0	51	36	63	0	0	0.95
56221--56247	6	4.5	6	100	0	54	0	0	81	18	0.69
56304--56557	33	7.5	33	75	9	226	18	6	48	26	1.73
58095--58259	87	1.9	87	89	2	260	53	8	17	20	1.70
61024--61066	22	1.9	23	85	4	61	62	4	6	25	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61858--61901	18	2.3	20	80	7	56	47	11	0	40	1.39
62292--62329	20	1.9	20	84	10	51	34	0	5	60	1.19
65693--65731	20	2.0	20	89	0	60	61	0	2	35	1.10
66713--66750	2	19.5	2	94	5	69	50	0	0	50	1.00
69368--69415	20	2.4	21	80	13	57	54	4	0	41	1.20
70413--70445	17	1.9	17	93	0	57	63	0	0	36	0.95
71023--71113	36	2.5	38	74	18	95	57	5	0	37	1.22
73496--73543	20	2.5	20	86	3	71	56	0	0	43	0.99
74958--74986	3	9.7	3	100	0	58	65	0	34	0	0.93
76898--76971	26	2.8	26	71	22	73	45	0	2	51	1.15
77901--77944	22	2.0	22	86	8	63	61	0	0	38	0.96
77938--77987	21	2.3	23	77	19	63	44	0	4	52	1.20
77973--78056	39	2.1	38	84	8	105	58	0	0	41	0.98
78591--78739	78	1.9	78	85	8	205	36	3	8	51	1.48
78674--78725	26	2.0	25	82	10	61	34	0	5	59	1.21
78591--78766	78	2.3	78	81	7	189	37	2	7	51	1.46
79188--79246	22	2.8	21	84	10	75	50	1	3	44	1.28
81218--81264	23	2.0	23	95	0	85	40	8	2	48	1.45
82095--82136	16	2.5	17	84	3	59	57	0	2	40	1.12
82873--82924	25	2.1	25	82	7	61	42	0	1	55	1.10
83640--83716	23	3.5	23	70	10	79	46	1	3	48	1.28
84231--84261	16	1.9	16	100	0	62	22	6	0	70	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85545--85594	22	2.2	23	79	13	59	72	8	0	20	1.10
85838--85879	22	2.0	21	90	4	66	69	2	0	28	1.01
86034--86076	22	2.0	22	90	0	68	0	39	0	60	0.97
86046--86070	13	1.9	13	100	0	50	0	40	0	60	0.97
86509--86656	31	4.7	31	71	9	104	55	8	0	36	1.30
86509--86616	15	7.0	15	73	9	74	52	6	0	40	1.27
87271--87328	30	1.9	31	85	3	82	46	0	0	53	1.00
87828--87885	16	3.4	17	75	13	64	36	0	0	63	0.94
87857--87911	21	2.5	23	77	11	62	45	0	0	54	0.99
88849--88885	14	2.4	16	91	8	60	51	0	0	48	1.00
91034--91096	23	2.8	22	76	11	65	36	1	12	49	1.51
91060--91090	16	1.9	16	93	0	53	41	0	12	45	1.42
91033--91096	22	2.9	23	79	4	69	35	3	12	48	1.57
91078--91146	22	3.2	22	72	24	67	42	0	1	56	1.08
91246--91279	10	3.2	10	84	15	50	47	0	0	52	1.00
91794--91857	18	3.3	18	66	29	51	28	6	12	53	1.62
91786--91867	40	2.0	40	100	0	164	24	7	14	53	1.66
91798--91862	21	3.2	21	60	8	53	26	6	15	52	1.66
91791--91880	40	2.2	40	90	0	135	26	8	14	50	1.72
92603--92660	30	1.9	31	85	3	82	43	3	3	50	1.36
93339--93386	16	2.9	17	75	15	55	39	0	0	60	0.97
93334--93387	16	3.4	16	69	20	51	40	0	0	59	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93440--93464	11	2.3	11	100	0	50	28	0	8	64	1.22
94332--94375	15	2.9	15	79	3	52	70	0	4	25	1.06
94714--94738	2	12.5	2	100	0	50	48	0	0	52	1.00
96402--96465	28	2.2	30	83	5	87	56	0	29	14	1.39
103992--104069	39	2.0	39	100	0	156	41	12	10	35	1.77
105676--105743	33	2.1	33	88	2	102	35	14	14	35	1.87
109460--125708	32	509.1	31	69	11	4621	31	21	19	28	1.97
109460--125715	63	253.7	62	70	11	4018	31	21	19	28	1.97
109518--109713	102	1.9	101	84	3	259	32	23	19	23	1.98
109624--109896	62	4.4	62	78	3	235	28	23	20	27	1.99

Tables:   1   2