genome.fa.s180.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold180
Parameters: 2 7 7 80 10 50 1000
Length:  544442

Tables:   1   2   3   4   

This is table  2  of  4  ( 396 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
132312--132761	226	2.0	227	88	3	674	43	9	8	39	1.66
133560--133611	16	3.2	16	86	0	68	17	17	17	48	1.82
136104--136163	20	3.0	20	69	26	54	46	1	0	51	1.10
136702--136757	27	2.1	28	83	6	71	37	7	7	48	1.58
136811--136851	20	2.0	20	85	4	55	36	2	4	56	1.34
137532--137574	22	2.0	22	90	0	68	62	0	2	34	1.08
140268--140299	17	1.9	17	93	6	57	81	3	9	6	0.97
140836--140930	49	1.9	49	83	8	122	23	9	10	56	1.62
141030--141161	48	2.7	48	81	3	149	23	9	13	53	1.68
141030--141180	49	3.1	49	80	3	153	21	8	16	52	1.70
141197--141589	58	6.8	58	77	5	258	27	7	18	46	1.75
141429--141564	57	2.4	57	82	5	157	31	6	14	47	1.70
144878--144959	28	3.0	27	77	13	78	58	1	1	39	1.14
151533--151723	71	2.7	72	78	7	192	32	14	15	36	1.88
152183--152353	65	2.7	65	77	1	148	44	21	8	26	1.80
152240--152369	65	2.0	65	92	0	215	39	18	11	30	1.86
153510--153692	93	2.0	91	82	7	226	37	22	14	26	1.92
157024--157061	19	2.0	20	89	5	60	34	0	2	63	1.09
160632--160658	2	13.5	2	100	0	54	51	0	0	48	1.00
163514--163583	22	3.2	22	83	4	70	41	5	1	51	1.34
164672--164719	20	2.4	21	75	10	55	12	8	8	70	1.32
166826--166885	32	1.9	31	83	10	77	60	10	10	20	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
167166--167191	13	2.0	13	100	0	52	30	15	15	38	1.88
169742--169766	13	1.9	13	100	0	50	32	16	16	36	1.90
171827--171857	15	2.1	15	93	0	53	12	22	16	48	1.80
173660--173704	21	2.1	21	84	8	56	22	20	4	53	1.63
177938--178394	89	5.2	88	77	8	396	31	18	13	36	1.89
179147--179187	21	2.0	21	85	9	57	41	12	7	39	1.70
179227--179297	20	3.6	19	75	7	61	42	16	11	29	1.83
179267--179403	53	2.6	53	95	1	238	37	18	17	26	1.93
179427--179457	10	3.1	10	95	0	53	25	29	3	41	1.71
179445--179499	21	2.5	22	88	5	85	29	23	9	38	1.85
179576--179601	13	2.0	13	100	0	52	30	15	23	30	1.95
182250--182294	21	2.1	21	87	0	63	55	4	2	37	1.32
182362--182396	18	1.9	18	88	0	52	77	17	0	5	0.96
182940--182986	2	23.5	2	100	0	94	48	0	0	51	1.00
183220--183261	19	2.2	19	86	4	57	69	4	2	23	1.20
183805--183871	26	2.5	26	76	11	64	76	4	0	19	0.96
184967--185012	20	2.3	20	85	7	58	23	2	2	71	1.08
185335--185422	21	4.1	21	66	21	65	34	1	4	60	1.25
185296--185422	65	2.0	65	96	0	236	33	0	3	61	1.20
185615--185654	20	2.1	18	86	9	53	25	0	5	70	1.08
188892--189281	89	4.4	88	74	5	255	41	13	14	29	1.85
191607--191652	20	2.3	20	92	3	76	78	2	4	15	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
199750--199778	15	1.9	15	100	0	58	62	0	20	17	1.33
202126--202191	32	2.1	32	100	0	132	54	15	12	18	1.71
208907--208937	16	2.0	15	93	6	53	0	29	0	70	0.87
211486--211514	14	2.0	15	93	6	51	89	0	10	0	0.48
212914--212997	41	2.0	41	97	0	159	34	21	15	28	1.94
213693--213728	2	18.0	2	100	0	72	50	0	50	0	1.00
213947--214030	42	2.0	42	100	0	168	38	28	11	21	1.89
215781--215815	2	17.5	2	100	0	70	51	0	0	48	1.00
223262--223300	11	3.5	11	83	16	53	71	2	25	0	0.98
228827--228859	7	4.9	7	85	7	50	42	0	0	57	0.98
229839--230045	79	2.6	79	82	1	245	29	16	28	24	1.96
229997--230068	28	2.6	27	84	8	83	25	18	33	23	1.97
230081--230214	52	2.6	51	89	7	207	38	8	23	29	1.85
230081--230231	51	2.9	52	87	7	209	36	10	21	31	1.88
232571--232597	13	2.1	13	100	0	54	40	7	22	29	1.81
234111--234148	17	2.3	17	95	4	69	50	5	15	28	1.66
234116--234152	17	2.2	17	95	0	65	51	5	16	27	1.66
238654--238712	12	4.8	12	76	15	50	35	0	0	64	0.94
238661--238724	17	3.9	17	73	20	57	37	0	0	62	0.95
239856--239901	24	1.9	25	91	8	78	45	21	8	23	1.80
239887--239954	27	2.5	27	87	0	100	45	20	10	23	1.81
239942--239999	26	2.3	25	91	5	91	25	15	25	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
241698--241724	13	2.1	13	100	0	54	62	14	7	14	1.51
242492--242560	24	2.8	25	82	4	88	27	23	27	21	1.99
242846--242885	20	2.0	20	85	4	55	60	5	5	30	1.40
243057--243179	36	3.2	36	76	22	142	54	0	2	43	1.13
243119--243164	19	2.5	20	89	7	62	56	0	4	39	1.19
244818--244853	18	2.1	18	94	5	65	47	8	0	44	1.33
245101--245125	13	1.9	13	100	0	50	68	0	0	32	0.90
247035--247130	16	5.6	16	67	18	59	55	2	0	42	1.11
247163--247217	24	2.2	25	87	9	78	61	3	1	32	1.24
249826--249864	16	2.5	15	79	4	51	30	2	2	64	1.21
250194--250240	19	2.3	21	75	17	53	57	2	0	40	1.11
293055--293092	18	2.2	18	85	4	51	65	0	10	23	1.23
293968--293999	3	10.7	3	100	0	64	34	0	0	65	0.93
295754--295824	14	4.9	14	75	13	63	66	1	0	32	1.01
295754--295799	13	3.5	13	84	3	56	65	2	0	32	1.05
295762--295824	23	2.9	21	81	9	81	68	0	0	31	0.90
297774--297810	19	1.9	19	88	0	56	43	0	0	56	0.99
298588--298629	15	2.9	14	77	22	50	28	0	2	69	1.01
300787--300821	2	17.5	2	93	0	61	51	0	0	48	1.00
302686--302723	6	6.3	6	93	0	58	63	0	0	36	0.95
303950--303996	24	2.0	24	83	8	60	59	6	14	19	1.56
304608--304633	5	5.2	5	100	0	52	19	0	0	80	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
307396--307450	9	6.2	9	79	8	51	72	0	0	27	0.85
307409--307466	9	6.0	10	76	15	52	77	0	0	22	0.77
307398--307454	8	6.8	8	75	16	53	75	0	0	24	0.80
307400--307459	26	2.3	26	85	8	77	76	0	0	23	0.78
307408--307461	8	6.4	8	83	10	54	77	0	0	22	0.76
310239--310274	6	6.0	6	96	0	63	47	0	2	50	1.15
311729--311785	20	2.8	20	94	0	105	43	5	42	8	1.58
311867--311937	27	2.6	27	88	6	99	46	23	7	22	1.76
316317--316373	20	2.8	20	94	0	96	38	3	47	10	1.55
316455--316525	27	2.6	27	86	6	90	46	23	5	23	1.74
317423--317507	32	2.6	33	74	9	84	32	0	4	62	1.16
322426--322453	2	14.0	2	100	0	56	50	0	0	50	1.00
323757--323784	2	14.0	2	100	0	56	50	0	0	50	1.00
339780--339819	18	2.2	18	86	8	55	47	0	0	52	1.00
339822--339885	26	2.4	27	79	10	69	56	3	0	40	1.15
339853--339886	17	2.0	17	88	11	52	61	0	0	38	0.96
341313--341364	16	3.2	16	75	24	56	50	3	0	46	1.20
341477--341566	27	3.3	27	81	9	103	36	3	0	60	1.14
341848--341890	17	2.5	18	78	21	56	55	0	0	44	0.99
342069--342134	21	3.0	21	88	4	96	39	1	0	59	1.07
343035--343122	27	3.2	28	78	12	94	54	2	3	39	1.30
343154--343201	20	2.4	19	82	6	60	70	0	8	20	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
343938--343995	21	2.8	21	97	0	107	39	1	0	58	1.08
343949--344025	39	2.0	38	80	14	86	40	3	0	55	1.18
345788--345832	21	2.1	21	95	0	81	24	26	2	46	1.64
349833--349862	2	15.0	2	100	0	60	50	0	0	50	1.00
350955--351309	177	2.0	177	83	3	455	29	14	19	37	1.91
352717--352749	16	2.1	16	100	0	66	33	6	24	36	1.80
359596--359645	26	1.9	26	87	0	73	46	14	4	36	1.63
368853--368887	16	2.1	17	89	5	54	82	0	17	0	0.66
368859--368888	10	3.0	10	95	0	51	86	0	13	0	0.57
375304--375384	35	2.3	35	82	6	92	72	9	12	4	1.25

Tables:   1   2   3   4