Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold180
Parameters: 2 7 7 80 10 50 1000
Length:  544442

Tables:   1   2   3   4   

This is table  4  of  4  ( 396 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
513648--513709
17
3.8
16
80
6
70
61
0
1
37
1.06
513648--513725
33
2.4
34
82
6
97
61
1
1
35
1.12
513648--513717
33
2.1
35
86
5
99
61
0
1
37
1.05
513648--513716
17
4.1
17
79
3
68
60
0
1
37
1.06
514584--514616
15
2.3
15
89
5
50
27
0
9
63
1.24
515495--515671
16
10.9
16
65
13
76
50
2
5
41
1.38
516007--516032
2
13.0
2
100
0
52
50
0
0
50
1.00
516229--516262
17
2.1
16
94
5
59
61
0
5
32
1.20
516293--516359
14
4.6
14
69
27
50
55
0
0
44
0.99
516303--516353
17
3.2
16
79
15
61
54
0
0
45
0.99
517387--517453
29
2.3
30
84
7
84
59
0
0
40
0.97
519467--519513
16
2.9
16
80
0
58
53
0
2
44
1.12
520157--520238
42
2.0
41
85
2
110
47
4
7
40
1.53
521322--521346
12
2.1
12
100
0
50
56
0
0
44
0.99
521550--521639
31
2.9
31
83
1
108
53
6
3
36
1.44
524081--524281
104
1.9
104
86
2
287
34
13
21
30
1.92
524445--524477
16
2.1
16
100
0
66
42
24
12
21
1.86
526467--526494
4
7.0
4
100
0
56
75
25
0
0
0.81
527917--528003
36
2.4
36
79
9
88
41
2
3
52
1.31
535586--535626
3
13.7
3
94
0
73
29
0
2
68
1.03
536215--536297
27
3.1
27
70
18
82
55
6
9
28
1.56
536963--537017
28
2.0
28
96
0
101
30
7
18
43
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
539519--539550
15
2.0
17
88
11
50
87
3
3
6
0.73
539864--539950
5
17.6
5
68
23
51
75
0
6
17
1.01
539856--539940
12
7.2
12
75
16
63
75
1
5
17
1.07
539827--539951
57
2.2
58
82
7
148
74
1
7
16
1.12
539862--539940
11
6.8
11
76
15
63
75
0
6
17
1.00
539846--539950
33
3.2
32
79
14
108
75
0
6
17
1.07
539996--540213
1
218.0
1
64
0
76
81
9
2
6
0.95
539995--540220
39
5.6
38
72
15
161
80
9
3
6
0.98
539997--540205
28
7.5
27
69
20
110
81
9
2
6
0.96
539996--540213
30
7.1
30
74
14
130
81
9
2
6
0.95
540260--540301
19
2.2
19
83
8
50
66
28
0
4
1.12
540381--540422
1
42.0
1
90
0
66
2
95
2
0
0.32
540859--540907
13
3.6
13
83
10
55
87
6
2
4
0.72
540859--540909
24
2.2
24
93
6
88
88
5
1
3
0.69

Tables:   1   2   3   4

The End!