genome.fa.s183.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold183
Parameters: 2 7 7 80 10 50 1000
Length:  471943

Tables:   1   2   3   

This is table  3  of  3  ( 350 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
337641--337685	22	2.0	22	91	8	74	35	0	28	35	1.58
338196--338312	20	5.8	20	75	8	85	38	17	15	29	1.90
352130--352213	16	5.2	16	79	12	75	82	13	3	1	0.86
352130--352200	13	5.7	12	75	6	61	83	11	4	1	0.86
353640--354024	28	13.5	28	82	7	404	33	31	16	19	1.93
353643--353983	88	4.0	86	83	8	408	32	31	16	19	1.94
353643--354024	58	6.7	57	82	7	431	33	31	16	19	1.93
354041--354420	49	7.6	49	76	6	280	26	25	15	32	1.95
354041--354420	150	2.5	149	82	5	410	26	25	15	32	1.95
354045--354420	101	3.8	100	72	9	279	26	25	15	32	1.96
355200--355224	13	1.9	13	100	0	50	36	16	16	32	1.90
355181--355256	32	2.4	32	86	4	109	34	15	15	34	1.90
355296--355320	13	1.9	13	100	0	50	32	16	16	36	1.90
361624--361662	17	2.4	16	87	8	53	41	7	20	30	1.80
361984--362031	12	4.0	12	73	10	53	70	0	2	27	0.98
362508--362553	23	2.0	23	95	0	83	47	10	10	30	1.73
363323--363348	13	2.0	13	100	0	52	38	15	15	30	1.88
363418--363443	13	2.0	13	100	0	52	38	15	15	30	1.88
363976--364039	21	3.2	20	70	17	51	34	25	3	37	1.72
363970--364021	19	2.6	20	71	20	54	32	30	1	34	1.69
367179--367224	23	2.0	23	91	0	74	47	8	10	32	1.69
367388--367422	18	1.9	18	88	0	52	40	0	2	57	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
367638--367690	19	2.8	19	85	5	63	43	3	0	52	1.19
367691--367728	16	2.5	15	83	8	51	52	0	0	47	1.00
370670--370708	2	19.5	2	100	0	78	51	0	0	48	1.00
383579--383642	32	2.0	32	81	9	76	40	6	4	48	1.49
384425--384461	15	2.3	16	86	13	58	32	16	5	45	1.70
384431--384460	15	2.0	15	100	0	60	33	20	6	40	1.78
391197--391238	21	2.0	22	85	4	59	33	21	26	19	1.97
393163--393210	24	2.0	24	84	4	62	33	8	14	43	1.75
394031--394102	35	2.1	35	97	0	135	0	18	13	68	1.22
394843--394929	42	2.1	41	82	14	108	49	1	1	48	1.16
395179--395219	20	2.0	20	86	13	57	58	0	0	41	0.98
395631--395670	13	3.2	13	83	16	57	22	10	0	67	1.20
395697--395732	17	2.1	18	89	5	56	58	0	0	41	0.98
395758--395805	19	2.5	20	83	10	73	54	0	0	45	0.99
399751--399819	29	2.3	29	83	11	79	30	1	4	63	1.22
399923--399964	20	2.2	20	86	4	59	42	4	0	52	1.22
399910--399964	19	2.8	19	76	13	58	41	5	0	52	1.24
400029--400133	52	2.0	53	82	12	128	30	5	3	60	1.38
400490--400523	13	2.6	13	95	0	59	58	0	0	41	0.98
401447--401528	43	1.9	42	83	14	105	54	2	2	40	1.26
401734--401820	29	3.0	29	73	8	77	54	2	1	42	1.20
402102--402144	16	2.7	16	74	0	50	32	0	11	55	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
403062--403117	12	4.3	12	73	22	51	71	1	0	26	0.96
403043--403117	38	1.9	40	86	5	109	66	2	1	29	1.13
403064--403124	28	2.2	28	88	11	90	70	1	0	27	0.97
403140--403236	29	3.2	28	71	23	79	69	2	0	28	1.00
403170--403224	10	5.7	10	77	16	53	63	0	0	36	0.95
403189--403259	17	4.1	17	71	10	54	64	2	1	30	1.16
403093--403230	19	7.3	18	68	21	61	66	2	0	29	1.11
403200--403236	19	1.9	19	88	0	56	72	2	0	24	0.97
403260--403368	28	4.2	27	72	18	81	29	0	3	66	1.08
403257--403368	9	12.1	9	74	11	93	28	0	3	67	1.07
411229--411303	13	5.8	13	73	20	59	45	4	1	49	1.29
411229--411303	7	10.4	7	77	18	66	45	4	1	49	1.29
412089--412117	2	14.5	2	100	0	58	48	0	0	51	1.00
412342--412380	19	2.1	19	90	0	60	35	0	7	56	1.28
414360--414925	165	3.5	164	73	11	382	32	9	7	51	1.62
416781--417204	148	2.9	147	82	4	489	22	16	19	41	1.90
417154--417282	63	2.0	63	85	5	172	20	13	21	44	1.86
417445--417511	34	2.0	34	93	0	116	22	16	13	47	1.81
418846--418871	13	2.0	13	100	0	52	30	15	15	38	1.88
418931--419004	20	3.6	20	78	7	94	31	17	13	37	1.89
418910--419004	42	2.3	42	96	1	174	29	16	12	41	1.86
419558--419653	48	2.0	48	100	0	192	25	29	8	37	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
421495--421532	13	2.9	13	96	0	67	31	15	18	34	1.92
423612--423642	15	2.1	15	93	0	53	12	22	16	48	1.80
427700--427725	13	2.0	13	100	0	52	30	15	15	38	1.88
427785--427858	20	3.6	20	78	7	94	31	17	13	37	1.89
427764--427858	42	2.3	42	96	1	174	29	16	12	41	1.86
429721--429755	2	17.5	2	100	0	70	51	0	0	48	1.00
431850--431903	19	3.1	19	70	25	64	40	11	0	48	1.39
431840--431903	33	1.9	33	100	0	128	37	12	0	50	1.41
431840--431891	14	3.4	14	72	23	50	38	13	0	48	1.43
433650--433698	20	2.5	19	84	12	64	42	16	12	28	1.84
439822--439855	3	11.3	3	87	0	50	29	32	0	38	1.58
441412--441449	20	1.9	19	89	5	58	26	18	18	36	1.94
441985--442529	149	3.7	147	80	5	549	41	19	13	25	1.88
441992--442529	298	1.8	297	81	2	686	41	19	14	25	1.89
442810--442852	21	2.0	21	86	8	61	23	4	2	69	1.18
443596--443652	22	2.4	25	80	13	68	64	15	1	17	1.37
444556--444874	164	1.9	166	79	7	355	49	7	12	30	1.69
446608--446660	20	2.7	20	80	11	56	41	11	0	47	1.39
447874--447909	2	18.0	2	94	0	63	52	0	0	47	1.00
451014--451049	18	1.9	18	88	5	54	47	0	0	52	1.00
451048--451089	21	2.0	22	90	9	70	59	0	0	40	0.97
451376--451419	12	3.8	12	79	11	56	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
456047--456317	29	9.5	29	79	1	244	38	4	20	36	1.74
456237--456330	27	3.4	27	86	5	116	38	6	20	35	1.78
456520--456912	156	2.5	155	79	6	406	25	15	17	41	1.88
458696--458863	80	2.1	78	80	3	185	34	8	25	32	1.85
463604--463742	69	2.0	69	98	0	269	33	22	7	36	1.82
464214--464257	2	22.5	2	93	4	72	45	0	0	54	0.99
464213--464249	19	1.9	19	100	0	74	43	0	0	56	0.99
464658--464715	25	2.4	22	74	23	53	36	10	6	46	1.65
465231--465307	21	3.8	20	87	5	100	38	15	12	32	1.86
465230--465307	41	1.9	41	89	5	122	38	16	12	32	1.87
465343--465410	19	3.9	19	78	21	85	35	11	14	38	1.83
465345--465407	32	2.0	32	96	0	117	34	12	15	36	1.86
465364--465388	13	1.9	13	100	0	50	36	16	16	32	1.90
465450--465475	13	2.0	13	100	0	52	30	15	15	38	1.88
465430--465496	33	2.0	33	88	0	98	25	14	16	43	1.86
467990--468162	52	3.4	51	80	5	204	30	25	12	32	1.92
467815--468159	51	6.6	52	72	11	211	31	26	11	31	1.91
468142--468223	28	2.9	28	83	7	96	24	32	17	25	1.96
467826--468215	211	1.8	211	86	3	570	30	26	12	31	1.93
469197--469226	2	15.5	2	93	6	53	50	0	0	50	1.00
470198--470247	27	2.0	26	84	11	68	40	6	4	50	1.46
471630--471780	79	1.9	81	84	5	209	30	8	25	35	1.86

Tables:   1   2   3

The End!