genome.fa.s1871.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1871
Parameters: 2 7 7 80 10 50 1000
Length:  379514

Tables:   1   2   3   

This is table  3  of  3  ( 277 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
328395--328889	102	4.5	104	82	10	426	23	21	28	26	1.99
328588--328868	119	2.4	120	84	6	362	27	20	27	25	1.99
335568--335601	17	2.0	17	88	0	50	5	26	17	50	1.69
340473--340516	21	2.1	21	83	8	54	25	31	4	38	1.76
340422--340594	71	2.5	71	95	0	303	26	29	5	38	1.80
340544--340587	21	2.1	21	83	8	54	25	31	4	38	1.76
342339--342364	13	2.0	13	100	0	52	38	15	15	30	1.88
344443--344473	15	2.1	15	93	0	53	12	22	16	48	1.80
346278--346322	21	2.1	21	84	8	56	22	20	4	53	1.63
348539--348564	13	2.0	13	100	0	52	30	15	15	38	1.88
352250--352417	51	3.2	50	78	8	185	32	10	26	31	1.89
352337--352469	51	2.6	52	79	12	141	34	9	24	30	1.88
352250--352469	103	2.1	104	81	7	252	33	10	25	30	1.90
352455--352529	27	2.7	28	89	2	107	21	20	34	24	1.96
352513--352644	51	2.5	52	81	9	151	33	11	22	32	1.90
352140--352641	263	1.9	264	85	2	688	31	12	26	29	1.93
354997--355022	13	2.0	13	100	0	52	38	15	15	30	1.88
354976--355042	33	2.0	33	88	0	98	43	16	14	25	1.86
355062--355129	19	3.9	18	76	23	83	38	14	11	35	1.83
355084--355108	13	1.9	13	100	0	50	32	16	16	36	1.90
355065--355127	32	2.0	32	96	0	117	36	15	12	34	1.86
355967--356485	55	9.3	55	83	9	515	23	21	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
356045--356187	47	2.9	47	86	10	171	19	22	29	28	1.98
355991--356485	102	4.5	104	81	10	424	23	21	27	26	1.99
356238--356464	59	3.8	59	89	1	328	28	21	25	25	1.99
356184--356464	119	2.4	120	85	5	369	27	20	26	25	1.99
362717--362939	52	4.3	52	80	5	211	34	12	24	29	1.91
362819--363073	134	1.9	131	80	8	293	34	12	23	29	1.92
364882--364911	10	3.1	10	95	4	53	0	0	23	76	0.78
365445--365470	13	2.0	13	100	0	52	38	15	15	30	1.88
365424--365490	33	2.0	33	88	0	98	43	16	14	25	1.86
367018--367257	98	2.5	97	77	5	243	27	27	13	31	1.94
371868--371893	13	2.0	13	100	0	52	38	15	15	30	1.88
374118--374162	21	2.1	21	84	8	56	53	4	20	22	1.63
375928--375958	15	2.1	15	93	0	53	48	16	22	12	1.80
377955--378032	20	3.7	20	73	18	68	26	15	15	42	1.87
378020--378058	13	3.0	13	96	0	69	30	15	20	33	1.94

Tables:   1   2   3

The End!