genome.fa.s1928.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1928
Parameters: 2 7 7 80 10 50 1000
Length:  404355

Tables:   1   2   3   

This is table  3  of  3  ( 349 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
298257--298314	13	4.0	13	74	23	53	34	15	17	32	1.91
298238--298313	32	2.4	32	95	0	134	32	14	19	32	1.92
298352--298379	13	2.2	13	100	0	56	28	14	17	39	1.89
298334--298397	33	1.9	33	87	6	94	31	15	12	40	1.85
305382--305529	52	2.8	52	88	2	217	32	16	16	34	1.92
306424--306550	67	1.9	68	86	1	184	38	12	25	23	1.90
306500--306929	49	8.9	52	76	14	311	33	16	23	25	1.96
306629--306696	22	3.1	22	62	19	52	32	19	23	25	1.97
306607--307339	49	16.1	43	74	16	426	33	16	24	24	1.96
306554--307323	92	8.4	92	79	11	723	34	16	24	24	1.95
306430--307288	451	1.9	446	91	3	1407	34	15	24	24	1.95
307375--307815	69	6.8	63	74	14	244	33	13	32	20	1.92
307375--307795	34	12.9	33	76	13	315	33	13	32	20	1.92
307707--307881	30	6.0	29	77	11	126	29	16	30	22	1.96
307737--307881	57	2.5	57	78	8	150	28	16	31	24	1.96
308835--308872	1	38.0	1	89	0	58	0	0	5	94	0.30
315995--316123	52	2.5	52	96	0	231	30	17	17	34	1.93
315995--316143	52	2.9	51	89	4	219	31	17	17	33	1.93
316132--316156	13	1.9	13	100	0	50	36	16	16	32	1.90
316197--316263	33	2.0	33	88	0	98	40	14	11	32	1.83
316219--316243	13	1.9	13	100	0	50	32	16	16	36	1.90
326588--326666	24	3.3	23	80	16	99	83	15	0	1	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
326589--326672	9	8.8	9	79	16	89	83	15	0	1	0.71
326589--326672	29	2.9	28	82	8	98	83	15	0	1	0.71
326570--326663	1	94.0	1	69	0	53	84	11	3	1	0.80
328096--328334	28	8.5	28	82	5	277	33	30	16	19	1.94
328090--328314	57	4.0	57	88	3	323	31	30	16	20	1.95
328092--328358	85	3.2	85	81	10	307	32	30	16	20	1.94
328318--328398	31	2.7	31	90	3	130	35	29	13	20	1.91
328419--328875	48	9.8	49	74	11	354	25	23	19	31	1.98
328470--328821	87	3.9	87	82	7	425	25	23	20	30	1.98
328420--328685	135	2.0	137	87	3	385	26	23	18	31	1.97
328565--328965	48	8.4	49	72	9	278	25	23	18	32	1.97
328419--328871	184	2.4	183	87	3	604	25	23	19	31	1.98
328598--328870	136	2.0	136	81	1	314	25	22	20	31	1.98
329720--329769	19	2.6	19	100	0	100	32	12	20	36	1.89
329799--329853	20	2.8	20	88	5	76	32	14	12	40	1.84
337022--337633	156	3.9	155	76	6	493	37	21	18	22	1.94
339484--340035	171	3.3	164	82	6	588	51	8	12	27	1.69
339562--340035	171	2.8	165	85	3	633	52	8	12	26	1.68
341076--341134	25	2.3	26	80	11	68	54	8	0	37	1.31
341275--341303	14	2.0	15	93	6	51	55	0	0	44	0.99
341509--341571	18	3.3	20	73	20	64	63	0	0	36	0.95
346034--346075	3	14.0	3	89	0	57	33	40	0	26	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
346034--346096	9	7.3	9	78	10	69	34	44	0	20	1.52
346035--346100	24	2.8	24	86	4	89	34	46	0	18	1.49
346034--346114	27	3.0	27	87	3	110	35	48	0	16	1.46
346074--346117	3	14.7	3	80	0	52	38	56	0	4	1.20
346038--346108	21	3.1	21	86	12	79	36	47	0	15	1.46
346071--346114	21	2.1	21	95	0	79	38	54	0	6	1.27
348449--348484	15	2.3	16	90	4	56	55	0	0	44	0.99
348407--348666	97	2.6	98	84	7	308	45	3	3	48	1.36
348692--348757	20	2.9	24	78	17	86	43	0	18	37	1.50
348818--348922	36	3.1	36	68	13	103	44	4	1	48	1.34
348909--348938	15	1.9	16	93	6	53	50	6	0	43	1.28
349258--349300	20	2.2	20	87	8	61	58	4	9	27	1.49
349309--349435	63	2.0	63	89	0	191	29	11	17	40	1.85
349404--349659	105	2.4	105	96	0	467	44	9	13	32	1.76
350170--350211	22	1.9	22	85	9	59	52	7	9	30	1.61
351660--351785	43	3.0	42	84	4	164	50	8	6	34	1.59
352955--352987	14	2.3	15	89	5	50	57	6	9	27	1.53
353564--353613	22	2.3	23	79	10	59	50	4	10	36	1.55
355354--355420	27	2.3	30	80	12	86	41	1	1	55	1.18
355396--355436	18	2.2	19	95	4	75	48	0	0	51	1.00
356527--356607	39	2.1	39	88	0	117	38	22	11	28	1.88
356924--356988	19	3.8	18	75	24	77	32	12	16	38	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
356926--356996	32	2.2	32	97	0	133	32	12	18	36	1.88
356945--356969	13	1.9	13	100	0	50	36	16	16	32	1.90
357041--357065	13	1.9	13	100	0	50	32	16	16	36	1.90
360442--360480	13	3.0	13	96	0	69	35	15	17	30	1.91
360466--360544	20	3.7	20	78	15	77	44	15	15	25	1.85
362558--362588	15	2.1	15	93	0	53	12	22	16	48	1.80
364392--364436	21	2.1	21	84	8	56	22	20	4	53	1.63
366653--366678	13	2.0	13	100	0	52	30	15	15	38	1.88
370348--370372	12	2.1	12	100	0	50	84	8	8	0	0.79
370351--370382	17	1.9	17	93	6	57	90	3	6	0	0.53
370351--370425	24	3.3	23	73	14	66	78	2	17	1	0.93
371157--371326	59	2.9	60	79	3	184	28	17	12	41	1.85
374854--375136	84	3.4	85	74	8	235	44	15	23	16	1.86
375224--375679	84	5.4	84	85	3	562	35	13	29	21	1.92
375249--375679	168	2.6	168	89	2	634	35	13	29	21	1.92
375741--375990	42	5.9	42	75	7	184	36	18	26	18	1.94
375929--376101	42	4.1	42	74	11	129	39	15	27	17	1.90
375983--376188	90	2.4	90	82	8	230	37	15	28	17	1.91
375983--376188	42	4.8	42	72	8	135	37	15	28	17	1.91
376066--376193	43	2.9	43	76	5	130	37	14	28	18	1.91
376270--376412	44	3.2	44	74	6	137	37	13	27	21	1.91
376785--377023	90	2.7	90	85	6	299	28	17	26	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
377988--378200	112	1.9	112	84	5	288	34	14	20	31	1.92
377974--378241	112	2.4	112	79	8	287	36	12	19	31	1.89
381081--381548	235	2.0	235	90	0	731	32	17	18	31	1.94
382592--384077	157	9.6	157	76	9	1073	38	21	17	23	1.93
383257--384067	156	5.2	156	79	1	766	38	21	16	23	1.92
384437--384474	3	12.7	3	100	0	76	31	0	0	68	0.90
393963--394040	33	2.5	31	88	10	108	48	16	16	17	1.81
398091--398189	20	5.7	20	69	30	100	39	15	18	27	1.90
398111--398201	13	7.9	13	68	26	80	38	15	17	28	1.90
398090--398201	33	3.4	33	100	0	224	39	15	17	27	1.90
398244--398296	20	2.7	19	88	5	79	39	13	11	35	1.80
398949--399256	104	3.0	104	84	4	286	32	17	25	25	1.96
399025--399321	52	5.9	52	86	3	394	32	18	24	24	1.97
399341--399479	28	4.9	28	84	6	165	18	15	28	36	1.92
401109--401283	20	7.7	20	68	23	89	41	11	17	29	1.84
401109--401283	90	1.9	91	94	1	307	41	11	17	29	1.84
402412--402442	13	2.4	13	94	0	53	35	12	16	35	1.87
402391--402458	33	2.1	33	88	5	102	36	17	13	32	1.89
402487--402542	19	2.9	19	83	2	67	37	17	12	32	1.88
403074--403185	50	2.2	50	95	0	197	27	23	7	41	1.80
404006--404032	13	2.1	13	100	0	54	40	14	14	29	1.86

Tables:   1   2   3

The End!