genome.fa.s1963.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1963
Parameters: 2 7 7 80 10 50 1000
Length:  463875

Tables:   1   2   3   4   

This is table  3  of  4  ( 368 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
321533--321563	15	2.1	15	93	0	53	12	22	16	48	1.80
325625--325650	13	2.0	13	100	0	52	30	15	15	38	1.88
325711--325783	20	3.6	20	81	3	101	31	19	13	35	1.91
325689--325783	41	2.3	42	96	1	174	29	17	12	40	1.87
330978--331036	20	2.8	22	85	12	79	40	11	18	28	1.86
330980--331036	22	2.7	21	86	10	73	40	12	17	29	1.86
331581--331637	13	3.9	13	76	24	60	35	14	17	33	1.90
331561--331661	32	3.1	32	94	1	166	36	11	15	35	1.85
331558--331656	19	5.9	17	70	28	70	36	12	15	36	1.84
331732--331912	52	3.5	52	96	0	326	35	19	17	27	1.94
347241--347561	30	10.7	29	78	8	229	28	29	16	25	1.97
347241--347561	59	5.4	59	73	11	233	28	29	16	25	1.97
347235--347406	86	2.0	87	87	3	249	28	31	16	23	1.96
347456--347581	28	4.4	28	89	2	180	36	28	16	18	1.93
347627--347966	48	7.0	49	85	4	418	24	27	18	30	1.98
347627--347966	149	2.3	145	89	2	502	24	27	18	30	1.98
348711--348767	13	3.9	13	76	24	60	35	14	17	33	1.90
348691--348791	32	3.1	32	94	1	166	35	11	17	34	1.87
348688--348787	19	6.0	16	70	29	68	36	12	17	35	1.86
348829--348853	13	1.9	13	100	0	50	32	16	16	36	1.90
348862--348937	32	2.4	32	97	0	143	31	21	19	27	1.97
348893--349022	52	2.5	52	96	0	233	35	18	18	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
353854--353879	13	2.0	13	100	0	52	30	15	15	38	1.88
356831--356922	30	3.4	30	65	27	87	27	17	16	39	1.91
356831--356943	50	2.3	50	87	6	167	26	19	15	38	1.91
359294--359703	79	5.2	79	83	6	460	28	23	14	33	1.94
359663--359733	28	2.5	28	93	0	124	25	23	19	30	1.98
359587--359814	106	2.1	107	86	2	325	28	25	14	32	1.94
359508--359893	185	2.1	186	87	1	569	27	24	15	32	1.95
359691--360303	79	7.8	79	83	2	730	28	24	14	33	1.94
359445--359968	264	2.0	265	85	3	716	28	23	14	33	1.94
359363--360049	343	2.0	344	86	3	963	27	23	14	33	1.94
360166--360219	28	1.9	28	81	7	65	20	22	18	38	1.93
361726--361804	33	2.4	33	93	0	140	34	13	16	35	1.88
363461--363491	3	10.3	3	92	0	53	35	0	35	29	1.58
369928--369971	22	2.0	22	90	0	70	36	4	22	36	1.75
370542--370568	13	2.1	13	100	0	54	29	14	14	40	1.86
370552--370608	19	2.9	19	78	2	69	31	15	17	35	1.92
370658--370682	13	1.9	13	100	0	50	36	16	16	32	1.90
370638--370702	33	2.0	33	85	11	89	35	15	16	32	1.91
380107--380169	1	63.0	1	74	0	54	87	4	4	3	0.75
380108--380181	7	10.6	7	87	8	71	85	4	8	2	0.82
380107--380181	16	4.5	16	80	11	71	85	4	8	2	0.81
381618--381673	19	2.9	19	86	2	67	35	16	12	35	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
381641--381712	20	3.7	18	78	12	72	41	15	15	27	1.87
382605--382668	33	1.9	33	87	0	92	25	17	31	26	1.97
384144--384180	13	2.8	13	91	0	56	40	16	10	32	1.83
384213--384267	20	2.8	20	94	0	92	36	18	7	38	1.78
391210--391241	16	2.0	16	100	0	64	37	18	12	31	1.88
391160--391291	47	2.7	49	87	9	187	40	13	16	29	1.87
391257--391312	20	2.8	20	88	0	85	39	14	12	33	1.83
392219--393064	28	29.6	28	85	5	1002	23	16	31	28	1.96
392219--393064	57	14.8	57	86	3	989	23	16	31	28	1.96
392199--393062	85	10.0	85	85	4	1058	24	16	30	28	1.96
394255--394301	10	4.8	10	80	20	55	2	2	8	87	0.71
394266--394299	17	2.0	17	100	0	68	0	0	11	88	0.52
401842--401894	20	2.7	20	91	2	81	30	15	18	35	1.92
401923--401991	33	2.1	33	83	5	86	31	13	18	36	1.89
409480--409528	24	2.0	24	100	0	98	18	12	16	53	1.73
411308--411350	19	2.3	19	95	0	77	18	23	16	41	1.89
413670--413720	21	2.4	21	86	0	66	39	5	31	23	1.79
414337--414389	13	4.5	13	71	26	55	33	13	16	35	1.88
414321--414389	33	2.1	33	89	5	104	31	13	18	36	1.89
417595--417634	19	2.1	19	85	0	53	70	7	10	12	1.35
424415--424468	20	2.7	21	80	8	67	29	18	16	35	1.93
424495--424532	20	1.9	20	100	0	76	26	15	13	44	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
424519--424543	13	1.9	13	100	0	50	32	16	16	36	1.90
424624--424673	20	2.5	20	86	0	73	40	16	10	34	1.81
425232--425743	61	8.4	61	83	4	554	26	25	19	28	1.99
425234--425754	183	2.8	180	83	7	629	26	25	19	28	1.98
425730--425956	42	5.3	42	79	4	199	22	25	12	39	1.89
430836--430956	52	2.3	52	97	0	224	28	18	18	34	1.94
430836--430976	52	2.7	51	90	4	212	30	17	18	33	1.94
430965--430989	13	1.9	13	100	0	50	36	16	16	32	1.90
431054--431078	13	1.9	13	100	0	50	32	16	16	36	1.90
431032--431098	33	2.0	33	88	0	98	40	13	11	34	1.81
431834--432374	171	3.2	171	88	6	749	35	15	24	24	1.94
431898--432056	49	3.1	48	74	9	129	36	16	22	24	1.94
432060--433042	52	20.0	51	86	4	1060	32	16	25	24	1.96
432335--433046	49	15.0	44	82	10	635	30	17	26	24	1.97
432330--433042	86	7.5	88	85	9	707	31	17	26	24	1.97
432503--433042	101	5.4	101	91	2	789	32	16	26	24	1.96
433047--433143	32	2.9	34	93	4	164	17	18	36	27	1.94
433146--433850	34	21.0	34	79	14	681	33	12	32	21	1.91
433144--433788	70	9.5	70	82	10	692	33	12	33	20	1.90
433179--433852	62	10.1	63	77	15	478	33	12	32	21	1.91
433532--433801	96	2.8	96	93	2	440	34	13	30	21	1.92
433532--433849	96	3.3	96	89	4	403	33	13	30	22	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
442064--442205	52	2.7	52	90	4	225	30	17	18	33	1.94
442269--442293	13	1.9	13	100	0	50	32	16	16	36	1.90
442247--442313	33	2.0	33	88	0	98	40	13	11	34	1.81
447242--448022	79	9.9	79	82	2	750	29	25	13	32	1.94
447241--448021	237	3.3	236	81	1	902	28	25	13	32	1.94
450278--450351	10	7.3	10	72	14	53	79	16	2	1	0.91
450298--450351	18	3.0	17	83	8	54	83	12	1	1	0.81
451595--451819	33	6.8	33	86	2	292	18	28	14	37	1.91
451595--451806	67	3.2	66	87	2	293	18	29	15	36	1.92
451601--451806	100	2.1	97	88	4	297	18	29	15	36	1.92
451614--451850	100	2.4	100	83	6	272	19	29	13	37	1.90
451671--452782	33	35.4	33	72	14	517	22	31	11	34	1.90
451812--452036	93	2.4	94	82	3	258	22	29	11	36	1.89
451912--451970	27	2.1	28	84	9	77	23	28	13	33	1.93
452010--452106	35	2.8	35	96	0	185	25	38	9	26	1.86
452050--452227	61	2.9	61	85	6	211	22	35	10	30	1.88
452104--452782	94	7.3	93	74	13	287	22	31	11	34	1.90
452244--452803	27	18.5	27	69	18	163	22	30	12	34	1.91
452235--452656	186	2.3	188	86	2	591	22	31	12	34	1.91
452240--452662	127	3.4	120	79	8	445	21	31	11	34	1.90
451845--452588	161	4.7	152	75	12	460	22	32	10	34	1.89
452509--452803	147	2.0	148	82	3	362	23	31	13	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
452550--452741	86	2.2	86	87	3	269	24	31	14	30	1.94
452696--452817	59	2.1	56	80	8	138	24	32	13	29	1.93
452812--452887	29	2.5	31	82	12	102	32	31	17	18	1.94
452919--453411	52	10.6	43	73	14	301	25	25	17	31	1.97
452999--453120	39	3.0	40	82	5	138	26	25	19	28	1.99
453043--453249	92	2.2	95	88	2	303	26	26	15	31	1.96
453274--453409	49	3.0	45	83	10	177	25	25	18	31	1.97
453223--453409	96	2.0	92	88	4	275	25	25	18	31	1.98
453682--453752	20	3.6	19	73	7	61	38	16	15	29	1.90
453722--453858	53	2.6	53	92	3	222	35	19	17	27	1.94

Tables:   1   2   3   4